Gene detail

Gene detail information of Glyur001128s00028297

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06600.3	3.00E-21	ubiquitin-specific protease 12
NR	XP_007212429.1	6.08E-37	hypothetical protein PRUPE_ppa016654mg, partial [Prunus persica]
Swissprot	tr\|O48890\|NRPB4_ARATH	1.00E-23	DNA-directed RNA polymerase II subunit 4
trEMBL	tr\|M5WW90\|M5WW90_PRUPE	2.00E-37	Uncharacterized protein {ECO:0000313\|EMBL:EMJ13628.1} (Fragment)

Sequence

Transcript Sequence

>Glyur001128s00028297.1
ATGAAGAGTCAACGCGCAAAGGGTAAACCACTTGAGAAATTCACATGGACGATTAAGAACTTCTCGAAATGGGATTATGAAGAACATGATATGTTCTCTGAGACTTTCTTCCTCAGTGGCCTTCCATGGTTGATTAAAATCTTTATGGAGGAAGAAGAAGAATACTTGGCAATTTATTTGTATCCTGGGGATCTTGCTAATTTGCCTAAAGGGTGGAGCAGATTTGCAAATTTCAAGTTGTCTCATGAACAAATGACAATTGTAAAAGAAACTGAACATGAGTTCCATGCAAGTAAAATTTGCCGGGATTTCTGCGATTTCATAGAATGGCGTGAAATTTGCTACTATAACAATGGTATTATTGTGAATGATACATGTATAATTGAAGCTGAGATTATTTCTGTCAGAAAGTCAAAACATGAGAGTCAAAGGATGTGTGTTCACGCTCGTGCCTTTATTGAATGGGCATTCACAGCTTTGGGTCGGGTTCTACATTTTTTGAAGACTAAAAAGGTGAAAGATATGGATGATGATGCTTGTGACCGTCTTCAGATTTTATGGGGAGAACTTGAGACATTTGGTTTTGATTTGACTTGGTTGAAACCCCATTTTGAATCTCTGTGTGTCCTAGGCAATCTTTGCCCGGAAACNGTGGAGGAAGCTATTGCTATGGTTCCATCTATCAAGACAAGAGGACGGGCTCAGGACGATGAAGCAATTGAGAAAATGTTAAATGACCTCTCACTNATTAAGAAATTTGAATAAGGGTTTCTTCCGATTCCCATAAATTATGGTTACTCCTGTGTTGTGATGTAAGTTGTATACTGTATAACACATGCAAACAAACATGTTTTGTGGTTTCTATTACAAAATTTGTCATTGGTAATATAGTAGCTTATTGTGACTTTTATCAAGAAGGAGCATTTGACTGATGCGTGCTGGTGTATGAGACTGTCTCTGACATGTTATGATGATGAAGTAAATGTGATTATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01128	4810	27712	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0044237 cellular metabolic process

molecular_function

GO:0000166 nucleotide binding

GO:0003824 catalytic activity

GO:0003899 DNA-directed RNA polymerase activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001128s00028297.1	PF00917.21	MATH	18	132	1.30E-08
Glyur001128s00028297.1	PF03874.11	RNA_pol_Rpb4	203	248	2.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.076
SRR1783600	control	7.072
SRR1783602	moderate drought stress	8.490
SRR1811619	moderate drought stress	8.217

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.331
DRR006520	Root Summer glycyrrhizin high producing strain	9.910
DRR006521	Root Winter glycyrrhizin high producing strain	6.252
DRR006522	Root Winter glycyrrhizin high producing strain	8.778
DRR006523	Root Summer glycyrrhizin low producing strain	13.311
DRR006524	Root Summer glycyrrhizin low producing strain	11.582
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.283
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.712

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.947
SRR2868004	Drought Stress (root)	28.126
SRR2967015	Control (root)	24.510

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.881
SRR9715740	Leaf	38.555
SRR9715741	Leaf	39.565
SRR9715739	Root	17.830
SRR9715742	Root	16.434
SRR9715743	Root	17.459

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.850
SRR8749028	MeJA induced 9h	11.011
SRR8749029	MeJA induced 9h	23.442
SRR8749030	Uninduced	16.404
SRR8749031	Uninduced	10.991
SRR8749032	Uninduced	16.104

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.232
SRR8400027	Control - Root	37.229