Gene detail information of Glyur001128s00028296 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G36930.1 | 1.00E-43 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | XP_003548629.1 | 0 | PREDICTED: TMV resistance protein N-like isoform X1 [Glycine max] |
| COG | NP_522403.1 | 1.00E-07 | hypothetical protein RS05354 [Ralstonia solanacearum GMI1000] |
| Swissprot | tr|F4KHI3|VICTR_ARATH | 2.00E-22 | Protein VARIATION IN COMPOUND TRIGGERED ROOT growth response |
| trEMBL | tr|I1MM77|I1MM77_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G10020.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01128 | 259 | 3682 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001128s00028296.1 | PF00931.17 | NB-ARC | 36 | 117 | 6.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.963 |
| SRR1783600 | control | 2.818 |
| SRR1783602 | moderate drought stress | 7.962 |
| SRR1811619 | moderate drought stress | 7.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.469 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.623 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.871 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.598 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.923 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.329 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.090 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.215 |
| SRR2868004 | Drought Stress (root) | 11.642 |
| SRR2967015 | Control (root) | 12.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.903 |
| SRR9715740 | Leaf | 5.193 |
| SRR9715741 | Leaf | 7.049 |
| SRR9715739 | Root | 0.223 |
| SRR9715742 | Root | 2.937 |
| SRR9715743 | Root | 2.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.040 |
| SRR8749028 | MeJA induced 9h | 3.717 |
| SRR8749029 | MeJA induced 9h | 1.129 |
| SRR8749030 | Uninduced | 3.343 |
| SRR8749031 | Uninduced | 2.446 |
| SRR8749032 | Uninduced | 1.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.153 |
| SRR8400027 | Control - Root | 7.596 |