Gene detail information of Glyur001127s00032703 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48280.1 | 1.00E-84 | hydroxyproline-rich glycoprotein family protein |
| NR | XP_007138573.1 | 0 | hypothetical protein PHAVU_009G220500g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LI74|CHUP1_ARATH | 4.00E-54 | Protein CHUP1, chloroplastic |
| trEMBL | tr|V7B101|V7B101_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW10568.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01127 | 71638 | 75834 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.671 |
| SRR1783600 | control | 4.817 |
| SRR1783602 | moderate drought stress | 2.500 |
| SRR1811619 | moderate drought stress | 2.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.312 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.449 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.025 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.181 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.683 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.953 |
| SRR2868004 | Drought Stress (root) | 1.811 |
| SRR2967015 | Control (root) | 2.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.398 |
| SRR9715740 | Leaf | 1.245 |
| SRR9715741 | Leaf | 0.835 |
| SRR9715739 | Root | 0.503 |
| SRR9715742 | Root | 1.719 |
| SRR9715743 | Root | 0.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.333 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.070 |
| SRR8749030 | Uninduced | 0.029 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.677 |
| SRR8400027 | Control - Root | 3.769 |