Gene detail

Gene detail information of Glyur001126s00037741.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G22170.1	5.00E-134	Phosphoglycerate mutase family protein
NR	XP_006578329.1	0	PREDICTED: phosphoglycerate mutase-like isoform X2 [Glycine max]
COG	YP_007160.1	2.00E-98	phosphoglyceromutase [Candidatus Protochlamydia amoebophila UWE25]
Swissprot	tr\|Q9FNJ9\|CA1P_ARATH	3.00E-06	Probable 2-carboxy-D-arabinitol-1-phosphatase {ECO:0000305} (Precursor)
trEMBL	tr\|I1JVH1\|I1JVH1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G11380.5}

Sequence

Transcript Sequence

>Glyur001126s00037741.1
ATGAACGCCGGTAAAAATAAATCGAAGGATATTCTTTGCTGGTTCTGCTTTGCATTAAATACAGAGGTGGAGCAGAAAACACGGAGAATGGCTTTTGAAGTGTATCACCAGGCTATTGGGGTTTCTCAATCCCATTCCTGCCTCAACAATTTCAGTCATCACCAAAAGATTGGGAACAATTTAGTAAGAANAGTGACAAAGGATTTCATCAGCAGTAATTGCCTTTCAAGGACTACAGGGAGTAATAATCTCTCTGCCAAGAGGAATTGNGTTGTAATTCGATCTTCAGCTTCTCAAAAATCAGTTTTTGATAGAGTGTCATCCCCTTCAAGAAACAATACTAGTGACACTCACAACAAGAAATCAAATGAAGCTGCTTTGATCCTTATTCGACACGGCGAGTCCTTGTGGAATGAGAAGAACTTGTTCACGGGCTGTGTTGATGTTCCACTAAGCAAGAAGGGCATAGACGAGGCAATTGAAGCTGGCAAAAGAATCAGCAGCATTCCTGTGGATGTCATATTCACATCTGCTTTAATCCGTGCACAAATGACAGCCATGCTTGCCATGACACAGCACCGTCGCAGGAAGGTGCCTATCATAATACACAATGAGAGTGAACAAGCAAGGAATTGGAGTCAAGTTTTTAGTGAAGATACAAAAAGGCAATCCATTCCAGTTATAGCAGCTTGGCAACTAAATGAAAGAATGTATGGGGAACTACAGGGTCTCAATAAGCAAGAAACAGCAGACAAATATGGGAAAGAACAAGTCCATGAGTGGCGCAGAAGTTATGACATACCTCCCCCAAATGGTGAAAGTTTGGAAATGTGTGCTCAAAGGGCAGTTGCCTATTTTAGAGACCAAATTGAACCTCAACTTTTATCTGGAAAGAATGTCATGATTGCAGCCCATGGAAATTCACTGAGATCCATTATCATGTATCTTGACAAACTAACTTCCCAAGAGGTTATTAGTTTGGAATTGTCAACTGGAATTCCNATGCTTTATATTTTCAAAGAAGGAAGATTCATTNGGAGGGGGAGTCCCATAGGACCAACTGAAGCTGGAGTTTATGCCTATAGTAGGGTAGTAGTATGTGGAGTCATATAAAANGGGAGAAAACAATATGTTATCAATGTTACAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01126	22522	26614	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01834	PGAM, gpmA	EC:5.4.2.11	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Glycolysis / Gluconeogenesis	map00010
			Methane metabolism	map00680
			Glycine, serine and threonine metabolism	map00260
			Glucagon signaling pathway	map04922
			Central carbon metabolism in cancer	map05230

Gene Ontology

biological_process

GO:0006096 glycolytic process

GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004619 phosphoglycerate mutase activity

GO:0016868 intramolecular transferase activity, phosphotransferases

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001126s00037741.1	PF00300.17	His_Phos_1	127	312	7.20E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.699
SRR1783600	control	0.703
SRR1783602	moderate drought stress	1.531
SRR1811619	moderate drought stress	1.562

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.872
DRR006520	Root Summer glycyrrhizin high producing strain	1.780
DRR006521	Root Winter glycyrrhizin high producing strain	1.349
DRR006522	Root Winter glycyrrhizin high producing strain	0.967
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.480
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.371

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.335
SRR2868004	Drought Stress (root)	0.773
SRR2967015	Control (root)	0.922

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.245
SRR9715740	Leaf	0.743
SRR9715741	Leaf	0.430
SRR9715739	Root	0.554
SRR9715742	Root	0.477
SRR9715743	Root	0.565

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.526
SRR8749028	MeJA induced 9h	0.171
SRR8749029	MeJA induced 9h	0.425
SRR8749030	Uninduced	0.203
SRR8749031	Uninduced	0.591
SRR8749032	Uninduced	0.202

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.475
SRR8400027	Control - Root	8.141