Gene detail

Gene detail information of Glyur001124s00023896

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13420.1	0	high affinity K+ transporter 5
NR	XP_003625895.1	0	Potassium transporter [Medicago truncatula]
COG	YP_845928.1	1.00E-108	K+ potassium transporter [Syntrophobacter fumaroxidans MPOB]
Swissprot	tr\|Q5JK32\|HAK5_ORYSJ	0	Potassium transporter 5
trEMBL	tr\|G7KRU2\|G7KRU2_MEDTR	0	Potassium transporter {ECO:0000256\|RuleBase:RU321113}

Sequence

Transcript Sequence

>Glyur001124s00023896.1
ACCTAACCAACGCGGGAAGCTCTCTCGTTGCTTTGCGGTCAGTTATGGTTCTGTTTTCCAATGCGTGTGTGACCTTTGAATTGGGAGAGACACTGTTCAGTTNGACCGTCTAACTGACTAATTTGTTGCGCAAATTAATTTGTTGAGCCAATATATTATTGCCATATATATATATATCATCAAAATGGCTTTACAAGAAGCAGCAGTNGTTGTGGACATGGAGAATATTGCAAACAACGAAGCGATGACAGAGCAGAACCACCACCTGCAGATCGAGAAGAAGCTTAATTCCTCGCAAAAGTTGCGAAGATATGACTCTCTTGAAATGGAATCCCGCAGATTCACCACCTCCCACGCCCGTGCCTCCAAAGGGCCAGCGATGCCGATGAGGGTAATACTACAACTGGCGTTCCAGAGTATCGGAATAGTGTACGGAGACATTGGGACATCGCCGTTGTATGTGTATTCAAGCACCTTCACGGATGGCATAAAGCACAACGATGATATATTGGGAGTTCTTTCCTTAATCTTTTACACCATCACTCTCATCCCTCTTCTTAAGTACGTCTTCGTCGTGTTGCGGGCTACTGATAATGGCGATGGAGGGACTTTTGCTCTGTACTCTCTGATATGCCGTTACGCCAAAGTGGGACTTATTCCGAATCAACAAGCAGAGGACGCAGAGGTGTCTAATTACCAGCTACAGTTGCCAAACAACCGTGAGAAGAGAGCATCAAGGCTTAAGTCCAAGCTTGAGAACAGCCACTTCATGAAGCTCTTCCTCTTATTTGCCACCATGTTGGGCACTTCCATGGTCATTGGTGATGGTGTTCTCACCCCTTGCATCTCTGTTTTATCCGCTGTAGGAGGGATCAAGCAGGCTGCTAGCCAAATAACTGACGATCAAATTGTTTTGATATCAGTAGGAATCTTGGTTGGCCTTTTCATGGTTCAGAGGTTTGGAACCGATAAAGTGGGTTACACTTTTGCTCCCATTATCTGTATATGGTTCGCCTTCATCGGAGGCATTGGCCTGTACAATTTCATCAAGCATGATGCAACAGTTATAAAAGCCATAAACCCAAAATACATAGTAGATTATTTCAGCAGGAATAAGAAAGATGCTTGGATTTCTCTTGGTGGTGTTGTGCTGGCCATAACAGGAACTGAAGCACTATTTGCTGATGTTGGACATTTCACTGTTCGGTCTATACAGATAAGTATGTGCTCTGTGACATACCCTGCTCTCATGTTGGCTTACGTTGGACAAGCCTCCTTTCTTCGCAAAAACAACGATCTTGTTAGCGAGACATTCTACAAGTCCATACCAGACCCTCTATATTGGCCAATGTTTGTGATTGCTATTATGGCAGCAATCATAGCTTCTCAAGCCATGATCTCTGGGACTTTCTCTATAATCCAACAATCCCTATCACTGGGATGTTTTCCTCGTGTGAGAATTGTACATACATCAGCCAAGTATGAAGGACAGGTTTACATCCCAGAGGTTAATTACATCCTCATGATTGCCTGTATTGCCATCACTGTTGGGTTCAAAACCACCACAAAAATTGGCAATGCCTACGGGATAGCAGTGGTGTTTGTTATGACACTTACATCTGCTTTTCTTGTGCTAATCATGATCATGATATGGAAGACCCACATACTTNTGGTCATTAGCTATGTGCTCATCATTGGTTCAGTGGAGCTTGTTTATTTAAGCTCGGTTTTATACAAATTTGACCAAGGAGGGTATCTCCCTCTTGTGTTTGCTGCATTGCTAATGATCATCATGTATGTTTGGAATGATGTGTACCGGAAAAAGTANTATTACGAACTGGATCATAAGATTTCCCCAGAGAAGCTCAGAGAGATTGCTAGTAACACAAACCTCTGTCGATTACCTGGCCTTGCAATGTTTTACTCTGAGCTTGTTCAAGGTATCCCNCCTATTTTTAAGCATTATGTGGCAAATGTGCCTGCACTTCACTCTGTCCTTGTCTTTGTTTCCATCAAATCCTTGCCTATTAGCAAAGTTCCAAATGAAGAGAGGTTCCTCTTTCGCCGAGTACAACCGAATGACCTCAATGTGTTCCGGTGTGTTGCTAGATATGGATACACTGATGTGCGCAATGAGCAAGAGCCTTTTGAGAAGTTGCTGGTTGAAAGATTGAAAGAGTTTATTGCTAATGAATATTGGTGGTCTCAAAAGGAGCTCCAAGATGNTGGTCAAAATGATGAAAAATTGAATGTTGTTGATGGTGATGAGGTTGATGAAGCACTAGTAGAAGTTAGTCATGAAGAAAGACTAAGAGAGGCAATTGAAAAGGAGATCGATGCAATTGAAAAAGCATCACGGGCAGGTGTTGTTCACTTNATTGGTGAAAACGAGGTGGTTGCTCGCAAAGGAGCTAGCATTGGAAAGAGGATTTTGATTGATTATGCCTACAATTTCTTGAAGAAAAACTTGAGACAGAGTGAGAAAATTTTTGATATTCCGCACAAACGCATGGTCAAAGTGGGAATGACTTACGAGCTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01124	51241	56318	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0071805 potassium ion transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015079 potassium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001124s00023896.1	PF02705.11	K_trans	75	647	1.30E-195

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.060
SRR1783600	control	3.139
SRR1783602	moderate drought stress	0.550
SRR1811619	moderate drought stress	0.631

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.384
DRR006520	Root Summer glycyrrhizin high producing strain	0.379
DRR006521	Root Winter glycyrrhizin high producing strain	0.846
DRR006522	Root Winter glycyrrhizin high producing strain	0.763
DRR006523	Root Summer glycyrrhizin low producing strain	0.909
DRR006524	Root Summer glycyrrhizin low producing strain	0.941
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.357
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.361

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.492
SRR2868004	Drought Stress (root)	3.801
SRR2967015	Control (root)	3.196

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.476
SRR9715740	Leaf	0.754
SRR9715741	Leaf	7.356
SRR9715739	Root	1.812
SRR9715742	Root	21.441
SRR9715743	Root	17.592

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.677
SRR8749028	MeJA induced 9h	1.617
SRR8749029	MeJA induced 9h	1.135
SRR8749030	Uninduced	10.183
SRR8749031	Uninduced	13.558
SRR8749032	Uninduced	3.448

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.921
SRR8400027	Control - Root	4.278