Gene detail information of Glyur001124s00023893.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03840.2 | 7.00E-85 | C2H2 and C2HC zinc fingers superfamily protein |
| NR | XP_007163083.1 | 0 | hypothetical protein PHAVU_001G204700g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SCQ6|IDD2_ARATH | 7.00E-103 | Protein indeterminate-domain 2 {ECO:0000303|PubMed:16784536} |
| trEMBL | tr|V7CY06|V7CY06_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW35077.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01124 | 36720 | 39615 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001124s00023893.1 | PF00096.21 | zf-C2H2 | 64 | 86 | 0.0049 |
| Glyur001124s00023893.1 | PF00096.21 | zf-C2H2 | 140 | 162 | 0.01 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.288 |
| SRR1783600 | control | 3.279 |
| SRR1783602 | moderate drought stress | 4.258 |
| SRR1811619 | moderate drought stress | 4.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.272 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.244 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.570 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.385 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.867 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.622 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.053 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.811 |
| SRR2868004 | Drought Stress (root) | 13.883 |
| SRR2967015 | Control (root) | 14.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.024 |
| SRR9715740 | Leaf | 0.074 |
| SRR9715741 | Leaf | 0.076 |
| SRR9715739 | Root | 0.707 |
| SRR9715742 | Root | 1.150 |
| SRR9715743 | Root | 1.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.035 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.261 |
| SRR8400027 | Control - Root | 1.734 |