Gene detail

Gene detail information of Glyur001124s00023888.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G43140.1	Cullin family protein
NR	XP_004494349.1	PREDICTED: cullin-1-like [Cicer arietinum]
Swissprot	tr\|P0CH31\|CLL1_ARATH	Putative cullin-like protein 1
trEMBL	tr\|W9R8A5\|W9R8A5_9ROSA	Uncharacterized protein {ECO:0000313\|EMBL:EXB40823.1}

Sequence

Transcript Sequence

>Glyur001124s00023888.1
TGTTGACTGTTGAGCATTGTCCGGAATCATACTGATTATTTTTCTGTTGCTAGGGTTTAGTATTGGTTCGCGCACTAGTTATTGAAACCTGCACTAGCATGATATAAATGTGTTTATGTCTTTGTATGTGATTATAAGATTGCTTTTGATCGTTTTTGTACTCTGGTCATTGTATAGTCTGAATATTTTTAATATTTTTGCAGCCACACAATGGAGCGGACGACCACTGATTTAGATCAAGGTTGGGAAAATATGCAGAGGGGGATTACCAAACTGAAGAGAATTCTCGAAGGATTACCAGAACCTCCTTTCAGTTCAGAGGAATCCATGTTGCTTTACACAACCATTTATAATATGTGTACTCAGAAGCCACCATTTGACTTCTCACAACAGCTTTATGACAAATACAAGGAGGCTTTTGATGAATATATTAAATCTACGGTGGNGAATCCTCTGCTGTTTGTTTTGCCTTCTCTGAGAGAAAAGCATGATGAGTTCATGCTGATGGAGCTTGTCAAGAGATGGTTAAACCATAAGGTCATGGTTAGGTGGCTTTCACGCTTCTTCCATTATCTCGATCGCTACTTCATTGCTCGGCGCTCCCTTCCTGGACTAAATGCAGTTGGGCTTTCTTGCTTCCGTGATTTGGTTTATATGGATGTACGAGCTAATGCTAGGAAAGCTGTGATCACTCTTATTAACAAAGAACGTGAAGGCGAACAGATTGATAGATCTTTGTTGAAAAACGTTCTTGATATATTTGTTGAGATTGGTANGGGTGAAATGGATCAATATGAACAGGATTTTGAGGTACAAATGCTTGATGATACTGCTGATTACTACAAAAGTAAGGCCACAAACTGGATTGAGGTGGAAGATCTCTCTAGGATGTATAGACTTTACCATAAAATACCTAAAGGCCTGGATCCTGTTGCCAATGTTTTCAAGCAGCATATTACAGATGAGGGTACAGCATTGGTCCAACAGGCTGAAGAAGCTGCTAGCAATCAGACTACAAGTGTTTCTGGCGTTCAGGAACAAGCAAGTCCCCTCATCTTTTCTCTTTTTTTAATTTTTTATTGTAACAACATCTGGAAAGGTCTGAAGATTAATCATGTGCAATTGCAGGTCCTTGTCAGAAAATTCATAGAGCTCCATGACAAGTATATGGCATATGTTAATGATTGCTTTGTGAATCACACACTGTTCCACAAGGCATTAAAGGATGCATTNGAGGTATTCTGCAATAAAACTGTTGCTGGTAGTTCCAGTGCAGAACTATTAGCTACATTCTGTGACAATATCCTTAAAAAGGGTGGAAATGANAAGTTGACTGATGAAGCGATTGAAGACACACTCGAGAAGGTTGTCAAGCTGCTTGCTTATATCAGCGATAAAGATCTCTTTGCAGAATTTTACAGGAAGAAGATTGCCCGAAGATTACTTTTTGACAGGAGTGCCAATGATGACCATGAGAAATGTATATTGACAAAGTTAAAGCAGCAATGTGGTGGCCAGTTCACATCAAAGATGGAGGGAATGGTGGTAGACTTGGCATTGGCAAGGGACAATCAGATGAAATTTGAGGAATATCTTCGCGAGAACTCACATGCAAATCCTGGAATTGACCTGACAGTTACTGTTCTTACCACAGGATTTTGGCCAAGTTATAAGTCTTTTGATCTCAACCTCCCTGCAGAGATGGTCAAGTGCGTGGAAGTTTTTAAGGACTTCTATGAAACAAGGACAAAACATAGAAAACTTACATGGATTTACTCACTGGGAACTTGCAACATCAGTGGCAAGTTTGAACCAAAAACCATTGAACTAATTGTCTCAACCTATCAGGCTGCTGCCCTGTTGCTATTCAACACTGCTGATAGGTTGAGCTATTCAGAGATTATGACCCAGCTGAACTTGACTCATGAAGACCTCGTTAGATTACTCCATTCCCTGTCATGCGCAAAATACAAGATCCTTGTGAAGGTGCCAAACACTAAAATTATTTCTCCAAATGACAGCTTTGAGTTCAACGCCAAATTTACTGATAAACTGAGAAGGATCAAGATCCCTCTACCACCTGTTGATGAAAGGAAGAAGGTTATTGAAGATGTTGACAAGGATAGGCGATATGCTATTGATGCAGCAATTGTGCGCATTATGAAGAGTAGGAAAGTTTTGGGCCATCAACAATTAGTTTTGGAGTGTGTTGAGCAGTTGGGCCGCATGTTCAAGCCTGATATCAAAGCAATCAAGAAGCGGATTGAAGATCTCATCACTCGGGACTACCTGGAAAGGGACAAAGATAACCCAAACACCTTCAGGTATCTGGCGTAGTGAAAGAAGCTACTGCTGATGTATAGAGTGGCCAGTGTTGAGGCCTGCAAATGAGAACTGGGATTGTCTGAATTTTATTCTTAGGTAAGTACAGTCAAAAATTCTGAAGGTTACAAAATGCTGTAAATGCTTGTAGTCGGTTGCTTAGTTCAGTGATCGGAGAAACTTAGTAGTAGGAGCGAGATTTTTGCATACATGACGTTTAAGAGTTAGTTTTAGTTACCATTTTATTTATTCTGTTGATATATATACGTACAGGAGCGAAGCAAGATAGAATACGCTGTATCTATTTTTTAGTTGCTTGGAGGAGGTGCTNGCAAGAAGCACCTGGGTTAGGAAAGTGAGGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01124	12620	19389	-

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex

molecular_function
GO:0031625 ubiquitin protein ligase binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001124s00023888.1	PF00888.17	Cullin	12	215	1.00E-39
Glyur001124s00023888.1	PF00888.17	Cullin	221	612	2.50E-109
Glyur001124s00023888.1	PF10557.4	Cullin_Nedd8	635	702	5.50E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.979
SRR1783600	control	10.084
SRR1783602	moderate drought stress	13.335
SRR1811619	moderate drought stress	13.257

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.751
DRR006520	Root Summer glycyrrhizin high producing strain	17.573
DRR006521	Root Winter glycyrrhizin high producing strain	29.514
DRR006522	Root Winter glycyrrhizin high producing strain	28.405
DRR006523	Root Summer glycyrrhizin low producing strain	17.597
DRR006524	Root Summer glycyrrhizin low producing strain	17.630
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.133
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.555

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.075
SRR2868004	Drought Stress (root)	18.578
SRR2967015	Control (root)	16.832

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.213
SRR9715740	Leaf	20.896
SRR9715741	Leaf	25.134
SRR9715739	Root	2.533
SRR9715742	Root	13.584
SRR9715743	Root	12.164

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.769
SRR8749028	MeJA induced 9h	16.777
SRR8749029	MeJA induced 9h	17.411
SRR8749030	Uninduced	11.788
SRR8749031	Uninduced	13.003
SRR8749032	Uninduced	11.939

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.461
SRR8400027	Control - Root	23.755