Gene detail

Gene detail information of Glyur001120s00031696.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26850.1	1.00E-101	F-box family protein
NR	XP_004513967.1	0	PREDICTED: F-box protein At2g26850-like [Cicer arietinum]
Swissprot	tr\|Q6NLB1\|FB118_ARATH	7.00E-130	F-box protein At2g26850
trEMBL	tr\|I1NDX8\|I1NDX8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G08260.1}

Sequence

Transcript Sequence

>Glyur001120s00031696.1
CTCCTTCTTCCTGTTTTTAAAGTCTCTCCTTCTCAAACCANTCCCATCATGGTGGGCAACTGAGATGAGGTTGCTTCTTCCCCTTTTGTTGTTCTGACAAGAGTTGTTGTCTGTGAAAACAATCTCCAAGTTGCTTAGAAATCGCCTCTGGCTTGGTTTTCTTNGTCAAATTCCAGCAAGGATGTCTTCAAGAGGAGCAGCAGAGAATAATAATGTTGAAGACAGCCAGGAGGACTTGTTNTCATTGTTGGACTTGCCTGAGCTGGCCATGGAATGCATTCTTGAAAGGCTACCTCCCTCTTCACTGTGTCGAATGGCCGGCGTTTGCCGTTCCTTGAGGGAGAGGTGTGTGAGTGATCACCTTTGGGAGAGGCACATGAAACAGAAATGGGGTGGAGTTATTGGTCCGGCTGCTTACAGGGAATGGAAATGGTATATTGCTTCAAAAAGGAATGTTGTGGGTACTCTTAAACATGGCAAGCAAAGAGGCTTGATGAGGTTTTTCTCTCTTCATTGGCCTTTTCAATGGATGAAATTAAAGGCTGATGCAAATAGTAGCAGCAAGCAGAGGAGTTTTTTGCCTGTGGATTCGGTCATGAACTGGTATATGGCTCTTGAGACTGGCAGCTTCTGGTTCCCTGCTCAGGTCTATAACCGCGAGAATGGTCACATTGGATTCATGTTGTATCCTCCACATGGAAGAAGGGCAGATGCTACAGAGTGTGGCATCCCATGGGAAAGGCTAAGAGCACCCCCTGTTGATACCACTCCACATGATCTTCATATCTCTGACTGTTTAAATGATTTGCATCCGGGTGATCACATAGAGATTCAGTGGAGGAGAAACAAANAATTTCCTTATGGTTGGTGGTATGGTNTTGTAGGACATTTGGAGTCATGCAACGGAAATGAAAATTATTGCTGCTGTCATGATAGTGACACAGTGGTGCTAGAGTTCAACCATTACACTCCTGGCTCAAGATGGAGACAAACTAGTGTGAGTAGGAAAGACCATAGGGAGCAGGGGAATGAGGCTGATGGCTNTTATGGGGGAATAAGAAAGATTAAGAGTGAGGATGAGATTTCCATTTGGAAACGCCTGTGGCCATCCGAAGTCTTGGACTAGTATAGGCACTGGATTGATCTGATCAATTTCTCTCTCCACTTTCCACGATTTCAAACAGAATTTAGCTTCGTTTCATCAACTGATCAAGCATTGACGACATATTTTGCATTATACAAGGAAATATACTACTTGAAGTGGACTTTTTTTGGGCTAAACTAGGGTATCCTCCGCATNCGTGTAGAGACTAATTCCTTCTAGCCACGTAAGACTATTTAGGCGGCAAAGCTTTACCATGCGAATTTTAAGGCTGCTTTCTTCCCAGAGTCTAGATTCGAACCTAGTACCACCGGTTAAACTAGACTTCAAGTGGACTTTTCATATATTTATTTACAGGCCAAATTGATTTTCTTTTCTGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01120	75429	79543	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001120s00031696.1	PF00646.28	F-box	21	65	3.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.121
SRR1783600	control	12.666
SRR1783602	moderate drought stress	24.158
SRR1811619	moderate drought stress	23.119

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.576
DRR006520	Root Summer glycyrrhizin high producing strain	0.965
DRR006521	Root Winter glycyrrhizin high producing strain	11.953
DRR006522	Root Winter glycyrrhizin high producing strain	10.148
DRR006523	Root Summer glycyrrhizin low producing strain	3.426
DRR006524	Root Summer glycyrrhizin low producing strain	7.153
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.902
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.560

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.901
SRR2868004	Drought Stress (root)	18.010
SRR2967015	Control (root)	19.736

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.686
SRR9715740	Leaf	5.984
SRR9715741	Leaf	15.010
SRR9715739	Root	2.298
SRR9715742	Root	7.322
SRR9715743	Root	5.820

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	79.188
SRR8749028	MeJA induced 9h	89.915
SRR8749029	MeJA induced 9h	61.680
SRR8749030	Uninduced	132.359
SRR8749031	Uninduced	138.163
SRR8749032	Uninduced	128.123

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.281
SRR8400027	Control - Root	3.508