Gene detail

Gene detail information of Glyur001120s00031689.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32780.1	3.00E-105	GroES-like zinc-binding dehydrogenase family protein
NR	XP_004492437.1	0	PREDICTED: alcohol dehydrogenase-like 3-like isoform X1 [Cicer arietinum]
COG	YP_001143866.1	2.00E-100	Zn-dependent alcohol dehydrogenase class III [Aeromonas salmonicida subsp. salmonicida A449]
Swissprot	tr\|A1L4Y2\|ADHL3_ARATH	4.00E-166	Alcohol dehydrogenase-like 3
trEMBL	tr\|I1J7B3\|I1J7B3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G28850.1}

Sequence

Transcript Sequence

>Glyur001120s00031689.1
ATGGCAGGTCCAGATTTTGCGAATGGGAACAACAACAACAACTCGTCATCGAACTTGAACCCAAGTGAGACAAGGGGAAAAAGCATTACTTGCAAAGCCGCCGTTGCATATGGTCCGGGAGAACCCTTCGTGGTGGAACAAATTCTTGTTCATCCTCCCCAGAAAATGGAGGTTCGAATCAAAATCCTCTATACTTCGATTTGTCACACCGATCTCAGCGCTTGGAAAGGCGAGAATGAGTCTCAGCGTGCTTATCCTCGGATTTTTGGGCACGAAGCTTCCGGAGTTGTGGAGAGTGTTGGGGAAGGGGTGAGTGAGATGAGAGAAGGGGACATAGTGGTGCCAATATTCAATGGAGAGTGTGGGGAGTGTGGCTACTGCACGTGCGAGAGGACCAACATGTGTGAGAGGTTTGGGGTGAATCCAACGAAGAAGGTGATGTATAGCGACGGANCAAGCAGGTTCTCAACCGTCGACGGCAAAACCATCTTCCATTTCTTGAACACTTCCACCTTCACGGAGTACACGGTGGTGGACTCAGCCTGTGTCGTCAAGCTCCACCCTGATGAACCCAACCTCAGCCTCAAAAACCTCACCTTGCTTAGTTGCGGAGTTTCCACAGGAATTGGAGCGGCATGGAACACTGCCAATGTGCATGCTGGTTCATCTGTGGCAGTCTTTGGTTTAGGTGCAGTTGGGCTTGCTGTTGCAGAAGGGGCACGAGCCAGAGGTGCTTCCAAAATAATAGGTGTAGATATCAACCCAGACAAATTCATCAAAGGCCAAGCAATGGGAATAACCGACTTCATAAATCCGAGGGATGAAGAGAAACCGGGTTGGGGATTGACTGTAATACTGGGAATTCATTCATCACCAAAATTACTTCCCATCCACCCAATGGAGCTCTTTGAAGGTCGCAGAATTGAAGGATCAGTCTTTGGAGGTTTCAAAGGGAAAAGCCAATTGCCTCATCTTGCCACAGAATGCTCACATAGAGAGGTAAAGCTGGATAATTTCATCACTCACGAACTTCCCTTTGAGGAGATAAACAAAGCCTTCGATCTTTTGATCAACGGGAAGTCACTGAGATGTCTCATGCACCTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01120	2847	10097	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00001	E1.1.1.1, adh	EC:1.1.1.1	Degradation of aromatic compounds	map01220
			Glycolysis / Gluconeogenesis	map00010
			Fatty acid degradation	map00071
			Tyrosine metabolism	map00350
			Retinol metabolism	map00830
			Chloroalkane and chloroalkene degradation	map00625
			Naphthalene degradation	map00626
			Metabolism of xenobiotics by cytochrome P450	map00980
			Drug metabolism - cytochrome P450	map00982

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001120s00031689.1	PF08240.7	ADH_N	57	186	1.20E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.011
SRR1783600	control	2.973
SRR1783602	moderate drought stress	7.818
SRR1811619	moderate drought stress	7.315

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.347
DRR006522	Root Winter glycyrrhizin high producing strain	0.272
DRR006523	Root Summer glycyrrhizin low producing strain	0.099
DRR006524	Root Summer glycyrrhizin low producing strain	0.098
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.127
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.963

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	118.114
SRR2868004	Drought Stress (root)	292.724
SRR2967015	Control (root)	216.335

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.160
SRR9715740	Leaf	1.396
SRR9715741	Leaf	6.576
SRR9715739	Root	5.950
SRR9715742	Root	10.160
SRR9715743	Root	9.005

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.322
SRR8749028	MeJA induced 9h	40.992
SRR8749029	MeJA induced 9h	43.422
SRR8749030	Uninduced	52.070
SRR8749031	Uninduced	170.825
SRR8749032	Uninduced	69.353

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	69.125
SRR8400027	Control - Root	51.234