Gene detail

Gene detail information of Glyur001118s00030859

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45130.1	9.00E-93	RAB homolog 1
NR	XP_007146971.1	7.47E-141	hypothetical protein PHAVU_006G086000g [Phaseolus vulgaris]
COG	YP_007069497.1	2.00E-23	small GTP-binding protein [Leptolyngbya sp. PCC 7376]
Swissprot	tr\|P31583\|RHN1_NICPL	1.00E-132	Ras-related protein RHN1
trEMBL	tr\|V7BPJ0\|V7BPJ0_PHAVU	3.00E-141	Uncharacterized protein {ECO:0000313\|EMBL:ESW18965.1}

Sequence

Transcript Sequence

>Glyur001118s00030859.1
CTGAGAGAAGCGTGTTTACACTACACGCAAGCGAAAAGCATATACAATTGAGAGAAGGACTGTTTTTGGCTTCATTCTCTTTTTCTTCTGCGTCTCCGTCTGCATCTTTTGATTCCCATTACTTCTTCTGGAAGCTTCTCTTCNNTCCGTTCTTCCCTTCCGATCGGTCCAATTTCACTTGCATGGCTACGATCGGACCCAACAACCTCAACGCCAAACTGGTTCTCCTCGGGGATATGGGAGCCGGAAAATCCAGCCTCGTCTTGCGTTTTGTCAAGGGTCAATTCCTTGAATTCCAGGAATCAACAATAGGGGCAGCATTTTTTTCACAGACGTTGGCAGTAAACGATGCCACAGTGAAGTTTGAGATTTGGGACACAGCNGGACAAGAGAGATACCATAGCTTGGCTCCCATGTACTACAGAGGCGCCGCTGCTGCTATCATTGTCTATGACATTACTAGTTTGGATTCATTTACACGAGCAAAGAAATGGGTCCAAGAACTTCAAAAGCAAGGGAATCCTAACATGGTCATGGCTCTTGCTGGTAACAAAACTGACTTGGAAGATAAGAGGAAAGTGACCGCTGAAGAAGCACGTGTATATGCTGAGGAAAATGGTCTGTTTTTCATGGAGACCTCTGCAAAAACTGCAGCTAATGTTAATGATATATTTTATGAAATAGCCAAGANGTTACCAAGGGCACAACCAGCGCAAAACCCACCAGGGATGGTTCTTGTTGATAGACCTGCCGANGGATCCAGAGCTGCATCATGTTGTTCATAATTTTATTATTTATTCTGTATGATCCCCCTTTAGTTAAACANGTTTTCTGTGGTTTGTATATACTATACTATCCCATCACGTTTTCTGCATCTTGTTGATAGCATTTGGCTAGATTTTACTACTATGGATGGATCTCAATGACAGACCTTAAGCCTAAAATTGGAGTTATCTTGTAGTCACTAAAACCAGCAGTGGATATCAATTTAACCCATTCTTTCTTGTTTCTCTCTTTTCCAGCGAGCAACACCATCATCTCCATATCCATGAAAAGTTGTGTTTCAACTGATTCATTGTCTTCCAGCTTCTCATTCTCCACCACCATGTCTATGATTATCACCTTCCCTTCTTTGTCTTTCCTCGAGATTGCTTCCTTACATTTCTTCAATATGTTCACACATTCCTCATCATTCCAGTCGTGCAATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01118	31124	36891	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001118s00030859.1	PF00071.17	Ras	12	171	8.90E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	62.251
SRR1783600	control	62.856
SRR1783602	moderate drought stress	41.079
SRR1811619	moderate drought stress	40.650

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	87.469
DRR006520	Root Summer glycyrrhizin high producing strain	86.156
DRR006521	Root Winter glycyrrhizin high producing strain	137.707
DRR006522	Root Winter glycyrrhizin high producing strain	132.370
DRR006523	Root Summer glycyrrhizin low producing strain	83.839
DRR006524	Root Summer glycyrrhizin low producing strain	82.281
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.391
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.095

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.315
SRR2868004	Drought Stress (root)	50.797
SRR2967015	Control (root)	43.550

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.454
SRR9715740	Leaf	33.539
SRR9715741	Leaf	38.600
SRR9715739	Root	24.849
SRR9715742	Root	28.725
SRR9715743	Root	30.138

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	75.220
SRR8749028	MeJA induced 9h	77.731
SRR8749029	MeJA induced 9h	186.844
SRR8749030	Uninduced	124.719
SRR8749031	Uninduced	276.770
SRR8749032	Uninduced	301.450

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.949
SRR8400027	Control - Root	51.885