Gene detail

Gene detail information of Glyur001118s00030855.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17230.2	2.00E-153	PHYTOENE SYNTHASE
NR	KHN41025.1	0	Phytoene synthase, chloroplastic [Glycine soja]
COG	YP_007121895.1	1.00E-100	phytoene/squalene synthetase [Microcoleus sp. PCC 7113]
Swissprot	tr\|P49293\|PSY_CUCME	0	Phytoene synthase, chloroplastic (Precursor)
trEMBL	tr\|K7KAF9\|K7KAF9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G40720.3}

Sequence

Transcript Sequence

>Glyur001118s00030855.1
AGATGAGTGACATAAAGCAGTATGGAACTAACTACTCAGAGAGTCTGAGACACAAAGTTCCAAACTTTGTGACAAGCGCTAGCGGGTGAAACGCAGAACCTGAGAACCAGACATTGGAAAGGCCTCAAATCCCACAATATATGTAGGAAGATAGCACAACTGAGAGGGAATGTTAAGAGACATTTCAGGATACAAAAGGGACATTTTTTATNATTGAGGAAAAAAAAAAGAGACAAAGAAAACAATTATTAGAACCAAGGTCTGGAAGAGTGGAGACTCTGGTGGGTCATACTCTCNTATTGTGAAGGGAAAAAGAAAAAGAAATTGCTCTTACTCTTAGTGGCCCTTGTTAGTTTTTGCTCCATGATGTGGATGGCTTTCTTTCATTCAAGCATATGTTCAATTAATGGGAAGCTCATATAAGTAAGTGGGTAAAGTCAGCAACAACACCCAACAGTTAGCTTTGGTGGGACAACTTTTTCTATTTGCTGGTACTGTGGTTTCCAAGACTTTTTATTGGATACAAGCAAGTTGCTTTGCATGTTTTGCTTGTTTTCTCAACTGGGAGGCTTTTAATGATTCTCTGAAGGATTGATATTTTGAGGAATAGGAAGTCTAAGAAGGAAAGGAATAAGCTCAGCAAGCAGGTTGCTAAAACCCCAAGAGTTTAGTCATGTCTGTGACATTNTTAGAGGTCTCCAATTCAACTGGGTTACTTGATTCTATCAGGGATGTGAAGCTCTTGGATTCTTCGTCCAAGTTCATGTCCAGAAATTTTGGGTCAATTAGAGCAAGGAAGGATAAGAAAAAGAGGTGGAGGTTTTGCTCNTTGAGTACAGATATGAAGTATGCATGTGTTGGTCAGTCTGGCTTCGAGAGTGCTAGTAACTTCCCTCTGATATCAAATGTGCTCGCAAACCCAGCAGCAGGAGAACCGGTTGTTTCGTCAGAGCAGAGGGTCTATGATGTGGTGCTGAAGCAGGCATCGTTGGTCAAGAGGAAGCTGGGACCTACTGGTGAACTTGAGGTGAAACCAGATATTGTGCTGCCTGGGAATTTGAGCTTGTTGAGTGAAGCCTACGACCGTTGTGGAGAAGTTTGCGCGGAATATGCTAAAACATTTTACCTGGGAACTCTCCTAATGACCCCAGAAAGGCGAAGAGCTATTTGGGCGATATATGTGTGGTGTAGGAGGACAGATGAACTTGTTGATGGCCCTAATGCTTCACATATTACACCATCTGCTTTGGATAGGTGGGAATCAAGATTGGAAGAACTTTTCCAAGGTCGTCCATTTGATATGCTTGATGCTGCTTTATCAGATACAGTTGCCAAATTTCCTGTTGATATCCAGTGTGGTGTAGGAGGACAGATGAACTTGTTGATGGCCCTAATGCTTCACATATTACACCATCTGCTTTGGATAGGTGGGAATCAAGATTGGAAGAACTTTTCAAGTCGTCCATTTGATATGCTTGATGCTGCTTTATCAGATACAGTTGCCAAATTTCCTGTTGATATCCAGCCATTTAAGGATATGATAGAAGGAATGAGAATGGATCTTAGGAAGTCAAGATACAAAACCTTTGACGAACTATATCTCTACTGTTACTATGTTGCTGGAACGGTTGGTTTGATGAGTGTTCCAGTCATGGGCATTTCACCGGATTCACAAGCCACAACGGAGAGTGTATANAATGCTGCCTTGGCCCTCGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGAATATATGGATAACTTGATTCCAGAAGACAATGAGATGCATATCACCTCACTGAGACCCGGTGTAGCTGGATTGAATCATCTCACCGAAAAAGAAAANTTTGAGATTGCTAGTAGAGGAAGAGTGTATCTACCACAAGATGAGTTGGCTCAGGCGGGGCTTTCAGACAATGACATATTTTCCGGTAAGGTGACGGACAAGTGGAGGAACTTCATGAAGAGCCAAATTAAAAGGGCAAGAATGTTTTTTGATGAGGCAGAAAAGGGAGTGACGGAGCTTAACGAAGCTAGCAGATGGCCGGTGTGGGCTTCCTTGTTATTGTATCGCCAGATATTGGATGAGATAGAAGCAAATGATTACAACAATTTCACAAAGAGGGCTTATGTGAGCAAAGCCAAGAAGTTACTTTCTTTACCAGCTGCATATGCTAGATCTGTGGTTCCTCCATCAAGAAAGCTATCTCCTGTAATGAAGGCATAGATCCTCCTCCTATACCATATGAAAGTTATTTAGAAAAAAAAAAGGACAGGACAAACAAAAAATAGGAAAAGCACAATTTGTGTATATGATTAAAATAAGGCTTGTATTTGTTATCCACTAATTGTAGTCAATGTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01118	10452	21215	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02291	crtB	EC:2.5.1.32 2.5.1.99	Carotenoid biosynthesis	map00906

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function

GO:0016740 transferase activity

GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001118s00030855.1	PF00494.14	SQS_PSY	145	494	3.10E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.890
SRR1783600	control	0.696
SRR1783602	moderate drought stress	0.836
SRR1811619	moderate drought stress	0.893

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.463
DRR006520	Root Summer glycyrrhizin high producing strain	11.158
DRR006521	Root Winter glycyrrhizin high producing strain	3.835
DRR006522	Root Winter glycyrrhizin high producing strain	3.707
DRR006523	Root Summer glycyrrhizin low producing strain	28.089
DRR006524	Root Summer glycyrrhizin low producing strain	27.295
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.728
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.676

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.904
SRR2868004	Drought Stress (root)	20.184
SRR2967015	Control (root)	20.984

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	42.972
SRR9715740	Leaf	31.076
SRR9715741	Leaf	40.460
SRR9715739	Root	1.826
SRR9715742	Root	7.131
SRR9715743	Root	5.736

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.456
SRR8749028	MeJA induced 9h	5.811
SRR8749029	MeJA induced 9h	7.653
SRR8749030	Uninduced	7.382
SRR8749031	Uninduced	2.093
SRR8749032	Uninduced	2.821

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.209
SRR8400027	Control - Root	16.407