Gene detail

Gene detail information of Glyur001117s00026962.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54160.1	5.00E-32	nuclear factor Y, subunit A5
NR	XP_004513462.1	4.81E-138	PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9SYH4\|NFYA5_ARATH	5.00E-37	Nuclear transcription factor Y subunit A-5
trEMBL	tr\|I3TAV3\|I3TAV3_MEDTR	2.00E-129	Nuclear transcription factor Y subunit A3 {ECO:0000313\|EMBL:AFK49645.1}

Sequence

Transcript Sequence

>Glyur001117s00026962.1
AAAAATATCAAGANAGAGAAATATAAAGACCGAGTGTGAGTGATCGCGAGTTGTGACTTGTCAATGAATAATGTTGGTGGTGGTGCTGGTTGTTACTGTTGAGTATTTATGTGTACTTAAGACGTGTTTGTTTCAGGAAAGCCAAAACACCAAGAAGTGAAGAGAGAGAAAGAGTGAGAGAGAAGGAGAAGGATCATTCTAGAGTGTGAAAGCTTTCAGTGAGATAGATAGAAGATAGATAGATATAAGTGGGTAGTAGTTAGTGGGTTGGGGGTTTCAAGAGAGGAAACATGCCCAACTTGAACCCAACAGTTTCAAGTACTTGTTGCTTCTTCATACCTTATTAACCAGATCCCAAAGGTCAAGATCTAAATTTTAAGTAATATGGCTATGTTGAAGGTCCCATGAAGCCTTTTCTCTTTTTGAATCATCCTGACACTGAGTTCAATTGTTCACAAGTCGACCGTGACCACTCGATGGCTCATGCTCCTTATCCTTATGGCNGCGATCAAATTTTTGCTGGTTCATTAGTTTCTTATGGACCACAGGCTGTTAATCAACCCCAAATGTTGCCCCAGATGCTGGGATTAGCATCCACCAGAGTTGCATTACCACTTGATCTTGCACAAGATGGGCCCATTTACGTCAATGCAAAACAATACCATGGTATACTGAGAAGGCGACAGTCGCGAGCGAAGCTTGAGGCTCAGAACAAACTCATCAAGAGTCGAAAACCATATCTTCATGAGTCTCGACACCGCCATGCTTTGAATAGGGTCAGGGGATCTGGAGGGAGATTTCTCAGCACCAAACAGCTCTCACAGTCTAATGCAGAATTTGTCACCGGTTCACATTCTGGCTCTGGCCCTGTCAACAAATATCAAAAGGAAGACCCTTTGGAGGCCAGAAGCCATTCCTCAAAAACCGGAGACAACGTGTCTTCCTCCATCTCAACCTGCTCCGACCGGACATGTTTATCCGGTAACAGCGTCAGTTTCAGGCAGGCTGCAGAGCACATGTTTCTGGGGAACACCGCAAACATGGGCNGTGGAGCACCACCACAATGCAGTGGCGGGGGACTCGCATTCGGTGGAACAAATCAACGTTGTGCTTCGGTTGTCCGGTGAGAGGGATTCAGACAGGCAAATCATCCTTGGCTTAATTAAATCAACTTCAGTTTCTACTCTCTGGTTTTCATTATGGGTTTGGTCACACTTCATTTTCTGTTTTCACTACGTGTTCTTTTGAGAACTTGCCTTTTTTTGAGATAGACTTTATTACAGTGTGCGTTAGCCACTCAAGACAAGACCTTTTTCTTATTGCTTTTGCTTTGATGTGCATTTTGAAGTTGCTATTGCTTACACTAGTAGTGTTTTGAAGTGGATTGGAATAGTACTATAATAGTTCCTGCATGGAACCTTTCTCGGTTTGTGATCAATGTAAAATTTCTATGGTACTATGTGCTTGTTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01117	84071	89538	+

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0016602 CCAAT-binding factor complex

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001117s00026962.1	PF02045.10	CBFB_NFYA	76	132	1.80E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	210.590
SRR1783600	control	202.538
SRR1783602	moderate drought stress	187.535
SRR1811619	moderate drought stress	194.160

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	112.210
DRR006520	Root Summer glycyrrhizin high producing strain	108.867
DRR006521	Root Winter glycyrrhizin high producing strain	111.539
DRR006522	Root Winter glycyrrhizin high producing strain	105.356
DRR006523	Root Summer glycyrrhizin low producing strain	67.909
DRR006524	Root Summer glycyrrhizin low producing strain	76.893
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.580
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.856

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.287
SRR2868004	Drought Stress (root)	40.217
SRR2967015	Control (root)	67.878

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.142
SRR9715740	Leaf	47.869
SRR9715741	Leaf	43.042
SRR9715739	Root	172.529
SRR9715742	Root	137.441
SRR9715743	Root	134.857

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.513
SRR8749028	MeJA induced 9h	2.962
SRR8749029	MeJA induced 9h	5.841
SRR8749030	Uninduced	9.276
SRR8749031	Uninduced	9.529
SRR8749032	Uninduced	13.965

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	153.914
SRR8400027	Control - Root	172.805