Gene detail

Gene detail information of Glyur001117s00026961.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11750.1	6.00E-100	CLP protease proteolytic subunit 6
NR	XP_003537887.1	2.24E-177	PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like [Glycine max]
COG	YP_004103032.1	8.00E-54	ATP-dependent Clp protease proteolytic subunit ClpP [Thermaerobacter marianensis DSM 12885]
Swissprot	tr\|Q9SAA2\|CLPP6_ARATH	2.00E-139	ATP-dependent Clp protease proteolytic subunit 6, chloroplastic (Precursor)
trEMBL	tr\|I1LJF6\|I1LJF6_SOYBN	8.00E-178	ATP-dependent Clp protease proteolytic subunit {ECO:0000256\|RuleBase:RU003567}

Sequence

Transcript Sequence

>Glyur001117s00026961.1
AGAACCGAAGCCGTGGACCTTGGTTTGGTGATGAGATCGAATAAAAGCTTCGGTGTTTCTGNAACGCCTTGTTTTGGAGCTTCACACAGGTTTCAAACAATGGTGGCTCAAGCTGTGTCAGTGCCTGCGAGTGCCAGCTTCACCATCGCTTCTCACAGGAGAAAAACCCCGTCCCAACTTGTGTTTTCTCAAAGAAACCCCTGCTCGATAGCTTCTTCCTTGCCAAGCCCCTATGGCCATTCGTCAAAAGTTGGGTTATCTAGTAGAAGCCGTGGCTTTCCTTTAAAACTTGATGAGAAAAATACCCATGATGCTAGTACAAGTTATGGTGCAATTGAAGCCAAGACGACGAATCCACCAATAACACCAGCAGTGATGACTCCTGGAGGACCCCTTGATCTCACATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGACAGCCAGTTAACTCACAAGTGGCTCAAAGAGTTATATCGCAGCTTGTGACCCTGGCTACTATTGATGAAGATGCAGATATATTGATGTATATAAATTGCCCTGGTGGAAGCACATATTCAGTATTTGCAATTTATGATTGCATGTCTTGGATAAAGCCCAAGGTTGGTACAGTATGTTTTGGAGTAGCTGCAAGCCAAGGAGCGCTTCTCCTTGCAGGTGGGGAGAAGGGAATGCGCTATGCAATGCCAAATGCTCGCATAATGATGAATCAGCCACAGTGTGGATTTGGGGGTCATGTTGAGGATGTGAGACGTCTAGTGAATGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTTTAGTTCTTTCACCGGACAGCCATTAGAAAAGGTGCAGGAGTACACAGAGAGAGACAGTTTTATGTCTGTTTCTGAGGCTTTGGACTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGAATCCAAGATTATTTGCTGTATATTTTTATTTCTANAATGTTGAAAATGTCAACTTTTGTCCAATTGATATTGTAGAATTTCATTATTTATAATTTGCAAGCATTGAGAGTGGTTTTTTCTTCTTAGTGCCTCGTGAATATGCAACTATTTGGAAGTTGACTTTCCTAGAATGGTTGTTTTAGTTTCAATTTGCAATTATGGAGTTCATGGTAGCTAAACCCTTGGTTATCGTTTTGATTTGAGAACCTAGGTATACACCCCAAACTTGTACTTTGATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01117	74690	78759	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01358	clpP, CLPP	EC:3.4.21.92	Cell cycle - Caulobacter	map04112
			Longevity regulating pathway - worm	map04212

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001117s00026961.1	PF00574.18	CLP_protease	123	296	7.40E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.410
SRR1783600	control	30.563
SRR1783602	moderate drought stress	21.248
SRR1811619	moderate drought stress	21.540

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.308
DRR006520	Root Summer glycyrrhizin high producing strain	35.697
DRR006521	Root Winter glycyrrhizin high producing strain	33.746
DRR006522	Root Winter glycyrrhizin high producing strain	32.783
DRR006523	Root Summer glycyrrhizin low producing strain	47.924
DRR006524	Root Summer glycyrrhizin low producing strain	48.225
DRR006525	Leaf Summer glycyrrhizin high producing strain	79.950
DRR006526	Leaf Summer glycyrrhizin high producing strain	79.888

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.842
SRR2868004	Drought Stress (root)	45.618
SRR2967015	Control (root)	49.545

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	93.641
SRR9715740	Leaf	105.900
SRR9715741	Leaf	92.904
SRR9715739	Root	32.261
SRR9715742	Root	33.600
SRR9715743	Root	29.798

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.338
SRR8749028	MeJA induced 9h	31.218
SRR8749029	MeJA induced 9h	42.512
SRR8749030	Uninduced	19.664
SRR8749031	Uninduced	18.903
SRR8749032	Uninduced	19.356

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.624
SRR8400027	Control - Root	56.741