Gene detail

Gene detail information of Glyur001117s00026956

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18820.1	3.00E-115	RAB GTPase homolog G3F
NR	AFK41965.1	2.19E-149	unknown [Lotus japonicus]
COG	YP_008431664.1	2.00E-27	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|P31022\|RAB7_PEA	2.00E-147	Ras-related protein Rab7
trEMBL	tr\|I3SNX3\|I3SNX3_LOTJA	8.00E-150	Uncharacterized protein {ECO:0000313\|EMBL:AFK41965.1}

Sequence

Transcript Sequence

>Glyur001117s00026956.1
AGAGAGAGCGGGGTTGCATACAAAAAGTTAAGCTAAGAGCGAGGAAGAGAAATAGAGTTGAAGGTAGTGGGAGAGAGCCGAGAGAGAAAGAGAGGGTCGAAGTTGAAGTCAAACAGAAAGCGGTTAACTGTTTCTTCTTCCGATCTGCACCAACCATGCCTTCCCGAAGAAGAACTCTCTTGAAGGTCATCATTCTCGGTGACAGCGGGGTGGGGAAGACATCTTTGATGAACCAATATGTGAATAAGAAGTTTAGCAATCAGTACAAGGCAACCATTGGAGCGGATTTCTTAACCAAAGAAGTGCAGTTCGAAGATAGGCTTTTCACCTTACAGATTTGGGATACAGCTGGCCAGGAAAGATTCCAAAGCCTAGGAGTTGCTTTCTATCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTTAATTCAATGAAATCATTTGACAACCTCAACAACTGGAGAGAGGAATTTCTTATTCAAGCAAGTCCTTCCGATCCAGAGAATTTTCCTTTTGTTGTTATAGGAAACAAGATAGATATTGATGGTGGGAACAGTAGAGTGGTTTCAGAAAAAAAGGCTCGAGCATGGTGTGCATCAAAAGGAAATATTCCATATTTTGAGACATCTGCCAAAGAAGGTATTAATGTTGAAGAAGCATTCCAATGCATAGCAAAGAATGCCCTGAAAAGTGGGGAAGAAGAAGAATTATACCTGCCAGACACAATTGATGTTGGAAACAGCAATCAGCAACGGGCAACAGGATGTGAGTGCTGAATATATAGATTTTCTTCTCAATACAAATAAAGATATTACTTGAAAATGATTTCGTCGCGTGTAGCCATTGCTGTCTACACGAGGTTTCATTGTACATTAGTGTTTGTTCAAGAAACAAATTGTTCCAATGCTATCTGTTGGGTGCTTGTTTGGTTTGTGCTAATCGATTACATTAGTCCTCTTTGTATGACATTCTGATATTGTGAAAGGAGCTGCTTAAGATCATTCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01117	42863	46810	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001117s00026956.1	PF00071.17	Ras	10	177	8.10E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	90.310
SRR1783600	control	90.179
SRR1783602	moderate drought stress	97.908
SRR1811619	moderate drought stress	97.053

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	90.480
DRR006520	Root Summer glycyrrhizin high producing strain	88.943
DRR006521	Root Winter glycyrrhizin high producing strain	138.395
DRR006522	Root Winter glycyrrhizin high producing strain	134.045
DRR006523	Root Summer glycyrrhizin low producing strain	98.739
DRR006524	Root Summer glycyrrhizin low producing strain	99.065
DRR006525	Leaf Summer glycyrrhizin high producing strain	62.189
DRR006526	Leaf Summer glycyrrhizin high producing strain	62.063

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	373.754
SRR2868004	Drought Stress (root)	358.838
SRR2967015	Control (root)	328.568

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	179.527
SRR9715740	Leaf	155.490
SRR9715741	Leaf	196.770
SRR9715739	Root	33.835
SRR9715742	Root	86.805
SRR9715743	Root	72.425

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	199.648
SRR8749028	MeJA induced 9h	155.130
SRR8749029	MeJA induced 9h	215.683
SRR8749030	Uninduced	186.131
SRR8749031	Uninduced	284.022
SRR8749032	Uninduced	201.906

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	249.196
SRR8400027	Control - Root	261.562