Gene detail

Gene detail information of Glyur001117s00026951

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34490.1	7.00E-164	cyclase associated protein 1
NR	XP_004507425.1	0	PREDICTED: adenylyl cyclase-associated protein-like [Cicer arietinum]
Swissprot	tr\|O65902\|ACAP1_ARATH	0	Cyclase-associated protein 1
trEMBL	tr\|G7JG54\|G7JG54_MEDTR	0	Adenylyl cyclase-associated protein {ECO:0000256\|RuleBase:RU000647}

Sequence

Transcript Sequence

>Glyur001117s00026951.1
ATGCAGAAGCCTGACCTTGCTGGGTTGGCTGAATTTCTGAAACCATTGAATGAAGTGATCACGAAAGCTACCACATTGACAGAAGGAAAGAGATCTGATTTTTTTAATCACTTGAAGGCTGCTGTTGACAGTCTCTCAGCGCTAGGATGGATTGCATATACCGGGAAGGATTGTGGTATGAGTATGCCCATTGCACATGTGGAAGAAAGTTGGCAAATGGCCGAGTTTTACAGCAACAAGGTACTTGTTGAGTATAGAAACAAAGACCCAAATCATGTTGAATGGGCCAAAGCTCTGAAAGAGTTGTATCTACCTGGTTTGAGGGATTACGTAAAGAGCTTTCATCCTTTAGGCCCTGTATGGAGTGCAACAGGAAAAATAATTGCTTCATCAAAAGCTCCTGCAACTGTTGCGCCTGCTGCCCCTTGTCCGCCGCCTGCTTCTCTATTTAGTTCTGAATCATCTCAGGCTTCATCTTCTAAGCCAAAAGTGGGAATGTCTGCTGTTTTCCAACAGATCAGTTCAGGAAATGTCACTTCAGGTCTGAGAAAGGTTACGGATGATATGAAGACTAAGAATCGCACAGATAAAACTGGAATTGTTGGCATTAGTGAAAAAGAAAGCCGTGCAGGTTCACATGCAGTTTCTAAAGTAGGACCTCCAAAGTTAGAACTTCAAATGGGCCGCAAGTGGGTTGTTGAGAATCAAATTGAGCAGAAAAGCTTGGTCATTGAAGATTGTGATTCAAAGCAGTCTGTATATGTTTATGGATGTAAAAACTCTGTGTTGCAGATTCAAGGCAAGGTCAACAATATAACTATTGACAATTGCAAAAAGATGGGAGTTGTATTTAAGGATGTTGTTGCAGCTTGTGAGATTGTAAACAGTAATGGGGTTGAGGTTCAATGCCAGGGTTCAGCTCCCACAATTTCGGTGGACAACACATCTGGCTGCCAGCTATATCTGAGCNAAGACTCTTTAGAAACATCCATATCTACAGCAAAGTCAAGTGAGATCAATGTGTTAGTTCCTGGTGCTGAGCCCGATGGTGATTGGGTGGAACATTCTTTGCCACAACAGTACATTCATGTGTTCAAGGATGGCCGTTTTGAAACAAGTCCAGCTTCTCACTCTGGAGGTTAACTTGATTGACAATTGAGAGTTTCTATTCATATTTACATCATCTTATTCCTTGGATTGCTGTGGGAGTGGCTTCAATCCCTCATTTCTTTTATTCATTTACAAATACAATCATGGATATAAGTTTACAATATTCATGCATGGCTACCTGTGCTTGTGATTTTTCCAATGGCATATTGAACCATTGGAAACATCCATATGATTTTTTCTTTTTGGGTCAGAGTTTGCTTCTTGTACGGTGCATTATGCAATTGGATTTTTAGCTTGTTTTTCTTCTTGGTTTCATTCTCATGTTTTTGCATTTCTTGAGGATAGAGCAATGATGATGTACTTGATGCACTCTGAAAGTTGTTCACTTGTTTGTGNATCTGTTTGAATGGATTTGTGCCCCAAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01117	18051	21218	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000902 cell morphogenesis

GO:0007010 cytoskeleton organization

molecular_function
GO:0003779 actin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001117s00026951.1	PF01213.14	CAP_N	2	199	1.60E-45
Glyur001117s00026951.1	PF08603.6	CAP_C	220	377	1.40E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.045
SRR1783600	control	11.966
SRR1783602	moderate drought stress	6.760
SRR1811619	moderate drought stress	6.786

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.038
DRR006520	Root Summer glycyrrhizin high producing strain	12.820
DRR006521	Root Winter glycyrrhizin high producing strain	5.786
DRR006522	Root Winter glycyrrhizin high producing strain	6.359
DRR006523	Root Summer glycyrrhizin low producing strain	6.245
DRR006524	Root Summer glycyrrhizin low producing strain	6.259
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.716
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.814

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	68.929
SRR2868004	Drought Stress (root)	40.405
SRR2967015	Control (root)	40.458

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.686
SRR9715740	Leaf	29.523
SRR9715741	Leaf	21.459
SRR9715739	Root	5.965
SRR9715742	Root	9.735
SRR9715743	Root	8.847

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	46.353
SRR8749028	MeJA induced 9h	33.011
SRR8749029	MeJA induced 9h	33.987
SRR8749030	Uninduced	16.362
SRR8749031	Uninduced	30.688
SRR8749032	Uninduced	29.581

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.588
SRR8400027	Control - Root	30.691