Gene detail

Gene detail information of Glyur001115s00021445.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22760.1	0	PHD finger family protein
NR	XP_004487539.1	0	PREDICTED: uncharacterized protein LOC101491390 [Cicer arietinum]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	3.00E-09	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|K7MK01\|K7MK01_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G05400.2}

Sequence

Transcript Sequence

>Glyur001115s00021445.1
ATGAAGCTTTCGCGTAAAAACAAAACAAATCTCCGAAAAATCACAGGAACTCCTCACGTTCCTCCTGATTTGACGATGGAACCACCGGTTGCGAGACCGAGGGGTCGCCCTCGGAAACGGAGAAGAAAAGAGGATGAAACCGTAACCGTTGCTCCGAAATCGATTCCCGAAGCGAAGAAGACGATAACACCAGTAGCATTGGTTGGGCGATACGTGCTGAAAGAGTTTCCGAGAAGCGTTGTTCTTCTCGGGAAGGTCGTGTGCTACGAGAGTGGCTTATACAGAGTCGCGTACGAGGATGGCGGTTGCGAGGACTTGGATAGCAGAGAGATTCGTAGGTTACTTCTGGATGACAGTTACTTCGACGACGAATTGAATCGAAGGAAGTGTGAATTGGACGAATCGCTGTTGCCGAAGATCGCAGATGCATCGGAGAAGAGTTCGGGCGAATTGCGTGGTGATTTAGCGTCGGAGAAGAGTTCGAGCGAATTTTGTGGTGATTTAACGGTTGAAAACGAAGAGGGACTAGATGAAACGGACGTTGATTCGTCTAGCGATTCCAGAGCTTTGTGTTCTGATGCCGAGACGCCGTTGCCGTTGCCACCGTCTTCGGGAACTATTGGTGTGCCGGAGCCATATGTTTCGTACCTCTTCTCAGTTTATGGATTCCTACGATCGTTCAGCACTAGGTTGTTTCTGAGTCCGTTTGCTTTGGACGAGTTCGTTGGTGCTCTTAACTGTCGAGTTTCGAACACGTTGCTCGATGCCGTTCACGTTTGCTTGATGCGTGTTTTGAGACGTCACCTTGAAAGGCTTTCAGCCGAGGGCTCGAGGATTGCGTCAAAATGCCTTAGGTGCAATGATTGGAACTTGCTTGATACATTGACCTGGCCTGTTTTTGTGATTCAATATTTAGCAATTAATGGATACACAAAGGGACCTGAGTGGAAAGGATTTTATGACGAGATTTTTTATGGCGAGTATTATCTATTGCCTGCAACTAGGAAGTTAGTAATATTGCAAATTCTCTGCGATGATGTTTTGGATTCTGAGGAGCTAAAAGCTGAAATGAACATACGTGAAGAATCAGAGGTTGGGATGGATTATGATGCTGAGGGTATCCTTCCTGCAGAAAATGGGCCAAGAAGAGTCCATCCAAGATATGCCAAAACTACTGCTTGCAAGGATGGCGAAACTACAAAGTTTGTTTCAGAATTAAATGCTGCGAATCTACCTGGTAATCCTGAGGACTGTGATGTTGATAGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGTACCTTGCTTTGTTGTGATGGATGTCCCGCTGCTTATCATTCAAGGTGTATCGGTGTGATGAAGATGTATATACCAGAAGGGGCATGGTATTGTCCAGAGTGCAAAATAAATATGATTGGGCCAACAATTGCTCGGGGATCATCTCTTAAAGGGGCTGAAATTTTTGGAAAGGATTCATTCGGGCAACTTTTCATGGGTACTTGTGACCACTTACTGGTGCTCAATGTCAACAGTGGTGAATTTTGTCTTAAATACTACAATCAGAATGACATTCCTGAAGTTATACGAGTGCTTTATGCGTCCATGCAACATAGACCTATATACTTTGGTATTTGTACGGCAATGTTACAATATTGGAATATTCCAGAAAGCATCTTACACATTTGTGTTCCAAATGGAACACATATAAACTCAGCAAATACAAAGATAGATGCAAACTTCTCTGCAGCATTACTTCCTCCTGTGGTTGAAGATGGCCATAAAGCTGTTGAATCAGGGAAGGCAGAGTATGGTCTAACATCCGCGGGTGGGATTTGTAGTGACAATATGGTGCCGTCTCTTGATGATTCATTGATTGCCACTAGTCCTGCTTGTGAAATCAGTGGCAATGCTGGAACTAAGGAGTCCCCTACCGTGAATATGAAGCTTCATGAGGATGCGATGGATTCTGTTGTTCCAACTGTTAACCATCAGTTTGACATGAGCTACCCAAATTCTGTTAACAGGTCAACTGCAGTTGATCCTGCCAAGTACTCCTTGGTAAGCTGCCAGTTTAATGATTATGGGCATGCAAATGACATGAGGTTGCCTATGAATTTGTCTCTGCAAACTAAAGGTGACCAAGCTGGTTTTGGAAAGTGCAAAGGCAATATAACTAATGATTTTGTGTACATGGGTTGCTCTTATAAACCTCAGTCATACATTAATTACTATATGCATGCTGATTTTGCTGCATCTGCTGCTGCTAACTTGGCCATTCTTTCTTCAGAGGATTCTAGATCAGAGGGTCATGTGTCAGACAACTTGAGGAAAGCTACATCTGAAAACACTTACTTGTTAGCAAAAGCATTGTCACTAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAGGTTCCTAGAGAGAGATGCGGCTGGTGCCTTTCTTGTAAGGCCCTTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACCAAAAGCGCTATGAAAATCCTTTCTGGTCTTGCTCCTGTAAGGAGTGGAGAGGGAATTATCCCTAGCATTGCAACATATGTCATATATATGGAGGAAAGCTTACGAGGTTTAATAGATGGGCCCTTTCTAAGTGAAAACTACAGAAAGCAATGGCGTAAACAAATGGAACGGGCCACATCATTTAGTGACATAAAGCCCCTTTTACTTAAACTTGAGGAGAACATTCGTACAATTGCTTTCTGTGGGGACTGGGTGAAGCTGATGGATGATTGGTTGGTTGATTTTTTTTCAATCCAAAGTGCTGCATGTACTCTTGGAACAACACAGAAACATGCACCATGTGGCAGGTATAAGAAACAGGTATCTATTGATGAAGTTAAAACTGATGGTGGTTTGAGGAAAATTTTGGGTATTTTCTATGCTGATGGCCCTGAAATTCCTAAAAGAAGCCGACAGCTGGTTTGGAGAGCTGCAGTTCAAATAAGTAGGAATGCATCACAGCTTGCACTTCAGGTCCGATATCTAGATTCTCATATCAGATGGATTGATCTGATTCGTCCAGAGCATAACCTCCAGGATGGGAACGTTCAAGATACTGAAGCTTCTGCTTTTAGAAATGCAAATATTTGTGACAAAAAGCTCGCGGAGGGAAACATTTTTTATGGTATGGCTTTTGGGAGCCAAAAGCATCTTCCTTCCCGGGTAATGAAAAATGTTGAAATAGAAGAAGGACCAGAAGGAAAGAAGTACTGGTTTTCTGAAACACGCATTCCTTTATATTTGGTAAGGGAGTATGAAGTAGGCAATGAAAAAGTGCCTTCTGATAAAGAGCACATGAATATTGCATCTCAATTGCACAAAAGGCAGTTGAAAGCTATCTGGAAGGACAAATTTTTTTACCTCACTTGCAAGAGAGATAAATTAGACATGTTATCATGTTCTGTATGCCAGCTGGGTGTTTTACTTGGGAATGCCCTCAAGTGCCGTGCATGTCAAGGTTATTGTCATGAGGGCTGTTCCATAAGTTCAACAGTTTCTACATATGAAGAAGTTGAGTTCTTGACCACATGTAAACAATGTTATCATACCAAATTACTTACTCAAAAAGAGACCAGTAATGAATCTGCAACCAGTCCCTTACTGTTACAAGGACAAGAACATAGCTCTTCGACATTTCTGAAGGGATCAAGGCCTAAATGTTATGATCAAGCTCTGCAATCTACTAGGGAAAAAGATAATGGTCCTGACGTGAAACAAGTTGCTTCTGATTCCCCTTTGGAAAGGAAAAGCCGTCGCAGAAACTGTTCTTGGGGTATTATATGGAAAAAGAAGAATAATGAAGATACAGGCTTTGATTTCAGGCTAAAAAACATACTTCTAAAGGGAGGCCCAGGCTTGCCTCAGTTGCAACCAGTTTGTCACTTGTGCCATAAACCATATAGGTCTGACCTAATGTATATATGCTGCGAAACATGCAAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAGTCCAAAATTTTTGATGTGCTGGGCTTCAAATGCTGCAAGTGTCGCAAGATAAAGTCACCTGTGTGTCCTTACTCTATTTTGATGTGCAAGGAGCAAGACGGCAAAAAGTCACACTCAAGGGTTTCCAAAAAAGAACATTCTGGAACGCTTACTAACATGATAGCATGTGACTCTGCTACTCCTATCTTTCTTGCGGAGGATGTCTCTAGACAAGAGCATCATCCTCTGCCGTTCTCTCTTTCAAATGTCAAGCTGATTACAGAACCCAAGTTAGATGCAGATCTTGGGTGTAATGCAGTCTCTGGGCCAGGGCTTCAGAAATTACCAGTGAGAAGGCATGTTAAACCTGAGGGGGACAATAATGGTTCTTTTGGGGGTAAAGTTCTGCATGCTGAATTTTCAACACACGGCGAAATGGGTAATCTGTCCAAAACTGCAGAGGTTTTGTCACCTTTTGTAGAATATGGCTCTGCTGTGCTCGCTGACTGCAATCTTCTGAATGACTCTGAAATTGTAAATGATGAATACATGGAGTCTGAGCCCCATCCCTCTGGGACTAAACTGCTGCCCCCAGATGATAGTAGCCAATTTGGAGAAGCTGACGTGTCAAGGAACTTGTCAGGATATGTAAAAAACTCTTGTACATTAGGTGTTCTTGAGAAATGTGGAACTGTTGGTTTATCGCACAACTTGGGACCTACAATTTCATTACGCGGAAATGTTTATAAATGTTCTCAATGTTCGCAAATGGAACCAGCCCCTGATCTCTCTTGTCAGATTTGTGGGATGTGGATTCACAGACAATGTTCACCTTGGATTGAATCATCATCTAGGCTTGGAGGTTGGAGGTGTGGTAATTGCCGGGAATGGCAATAGTTGATTTAGTGTTCATACCATCAAATGAGAGTTCTCTTGGGTGAGGTGGTACCATGGTAGTGGGTTGAACTTTGACAGCCAATTTTCCCAGTAATCGGGTACCAGCTGGCTCAATGGATATGTGCATTAATTGGTCCAGGTATAGACGAGTTGAATCCATTGCAGTAGAACTTGTGCTATGAATTTTTCTGTTACCACTCGCAAATCATCGCGGCTTCTCCAGTGACTAGTGGACCCAGTCTTTTTGATCGAGTGATTTGACTTTTGATATGATTTCCAACCTGCCGTCAGTTTGGTCGAATTCTCTATAGCTATATCGGCTTATTTATACTCCCTAGTTGCATATCAGATTTTCCCCCTTACATTACAGAATTCACAGAAACTTGCTCCTCTCGGGAGATAAGCAGGTTTTTTACGATGCTTATCTGACAGTAGTTGTATAGATTAGTGTTCCTATTCTTTGGAGGTCAGTCAATTGAAACCTTCACCTCTGATCAGAGTTCATGCTTTGATTATGCCTACTGAGTCCCCCTTTCTCCCATCCCCATCTGAAGTCTCTGCTTCCGCCTTCTACCCTTGGGTTTTTGGTTCCTATTGCCCGAGTCAAGAACATCTCTCTACCTTTGCTAAATTGGAAAATGACAAACCAAGTCGAGCACATCCTCAAGTGCTCGAGGAACCAGAGAATTTTCAGCACTAACATTTATTTATCTTTACAAT

Protein Sequence

>Glyur001115s00021445.1
MKLSRKNKTNLRKITGTPHVPPDLTMEPPVARPRGRPRKRRRKEDETVTVAPKSIPEAKKTITPVALVGRYVLKEFPRSVVLLGKVVCYESGLYRVAYEDGGCEDLDSREIRRLLLDDSYFDDELNRRKCELDESLLPKIADASEKSSGELRGDLASEKSSSEFCGDLTVENEEGLDETDVDSSSDSRALCSDAETPLPLPPSSGTIGVPEPYVSYLFSVYGFLRSFSTRLFLSPFALDEFVGALNCRVSNTLLDAVHVCLMRVLRRHLERLSAEGSRIASKCLRCNDWNLLDTLTWPVFVIQYLAINGYTKGPEWKGFYDEIFYGEYYLLPATRKLVILQILCDDVLDSEELKAEMNIREESEVGMDYDAEGILPAENGPRRVHPRYAKTTACKDGETTKFVSELNAANLPGNPEDCDVDRNGDECRLCGMDGTLLCCDGCPAAYHSRCIGVMKMYIPEGAWYCPECKINMIGPTIARGSSLKGAEIFGKDSFGQLFMGTCDHLLVLNVNSGEFCLKYYNQNDIPEVIRVLYASMQHRPIYFGICTAMLQYWNIPESILHICVPNGTHINSANTKIDANFSAALLPPVVEDGHKAVESGKAEYGLTSAGGICSDNMVPSLDDSLIATSPACEISGNAGTKESPTVNMKLHEDAMDSVVPTVNHQFDMSYPNSVNRSTAVDPAKYSLVSCQFNDYGHANDMRLPMNLSLQTKGDQAGFGKCKGNITNDFVYMGCSYKPQSYINYYMHADFAASAAANLAILSSEDSRSEGHVSDNLRKATSENTYLLAKALSLTASRFFWPSSEKKLVEVPRERCGWCLSCKALSSKKGCMLNHAALSATKSAMKILSGLAPVRSGEGIIPSIATYVIYMEESLRGLIDGPFLSENYRKQWRKQMERATSFSDIKPLLLKLEENIRTIAFCGDWVKLMDDWLVDFFSIQSAACTLGTTQKHAPCGRYKKQVSIDEVKTDGGLRKILGIFYADGPEIPKRSRQLVWRAAVQISRNASQLALQVRYLDSHIRWIDLIRPEHNLQDGNVQDTEASAFRNANICDKKLAEGNIFYGMAFGSQKHLPSRVMKNVEIEEGPEGKKYWFSETRIPLYLVREYEVGNEKVPSDKEHMNIASQLHKRQLKAIWKDKFFYLTCKRDKLDMLSCSVCQLGVLLGNALKCRACQGYCHEGCSISSTVSTYEEVEFLTTCKQCYHTKLLTQKETSNESATSPLLLQGQEHSSSTFLKGSRPKCYDQALQSTREKDNGPDVKQVASDSPLERKSRRRNCSWGIIWKKKNNEDTGFDFRLKNILLKGGPGLPQLQPVCHLCHKPYRSDLMYICCETCKNWYHAEAVELEESKIFDVLGFKCCKCRKIKSPVCPYSILMCKEQDGKKSHSRVSKKEHSGTLTNMIACDSATPIFLAEDVSRQEHHPLPFSLSNVKLITEPKLDADLGCNAVSGPGLQKLPVRRHVKPEGDNNGSFGGKVLHAEFSTHGEMGNLSKTAEVLSPFVEYGSAVLADCNLLNDSEIVNDEYMESEPHPSGTKLLPPDDSSQFGEADVSRNLSGYVKNSCTLGVLEKCGTVGLSHNLGPTISLRGNVYKCSQCSQMEPAPDLSCQICGMWIHRQCSPWIESSSRLGGWRCGNCREWQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01115	33246	42419	-

Gene family

Gene family	subfamily
Transcription Factors Family	DDT

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0035556 intracellular signal transduction

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001115s00021445.1	PF02791.12	DDT	214	270	2.10E-11
Glyur001115s00021445.1	PF15612.1	WHIM1	327	361	0.00031
Glyur001115s00021445.1	PF00628.24	PHD	427	469	1.60E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.252
SRR1783600	control	3.236
SRR1783602	moderate drought stress	4.024
SRR1811619	moderate drought stress	4.071

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.853
DRR006520	Root Summer glycyrrhizin high producing strain	3.815
DRR006521	Root Winter glycyrrhizin high producing strain	8.207
DRR006522	Root Winter glycyrrhizin high producing strain	8.020
DRR006523	Root Summer glycyrrhizin low producing strain	5.149
DRR006524	Root Summer glycyrrhizin low producing strain	5.089
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.903
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.973

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.986
SRR2868004	Drought Stress (root)	8.132
SRR2967015	Control (root)	7.242

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.714
SRR9715740	Leaf	5.184
SRR9715741	Leaf	4.566
SRR9715739	Root	0.714
SRR9715742	Root	5.964
SRR9715743	Root	4.510

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.370
SRR8749028	MeJA induced 9h	4.686
SRR8749029	MeJA induced 9h	1.848
SRR8749030	Uninduced	2.444
SRR8749031	Uninduced	1.214
SRR8749032	Uninduced	0.863

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.913
SRR8400027	Control - Root	6.451