Gene detail

Gene detail information of Glyur001114s00030044.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18340.1	6.00E-131	Glycosyl hydrolase superfamily protein
NR	XP_004486020.1	0	PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Cicer arietinum]
Swissprot	tr\|Q9ZQG9\|E1314_ARATH	2.00E-118	Glucan endo-1,3-beta-glucosidase 14 (Precursor)
trEMBL	tr\|I1MF29\|I1MF29_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G10050.1}

Sequence

Transcript Sequence

>Glyur001114s00030044.1
TTGGAATCTTAGAGAGTCTCTTCCTTGATCACAATGGCAACATTCATCAGAACAATGATCATCAGCTATATTTTTCTCCTATTTTCTCTCTCTTCGGATATTGGATTATTTCGAGGGGTTGAATGTTTTGGAATCAACTATGGTCAAGTGGCTAACAATTTGCCACAACCTGATAAAGTCCTTGAACTGTTGAGCACCCTAAACCTCACAAAGACAAGAATTTATGACACCAACCCACAGATCCTGAGCACATTCGCCAACTCAAACATTGAGATCATTGTGACAGTTGAAAACGAAATACTTAGCCAGTTAGATGATCCTCAACAAGCACTTCAATGGGTAAGCAGCCACATCATACCATACCTTCCCCACACAAAGATCACAGGAATTCAAGTTGGGAATGAGGTCTTCACTGATGATGACACCACTCTTCTTCAGCACCTTGTGCCAGCAGTGGTAAACATTCACAATGCTCTAGCTCAATTAGGCTACTCAAACATCCAGGTCTCAACACCTAGTTCCTTAGCAGTTCTTCAGGAATCTTACCCTCCTTCAGCTGGTAGTTTCAAGAGTGAGATCAATGGCATCATGTACCAGTTTCTGAACTTCTTGTCAACCTCAAAAGCACCCTTTTGGATCAATGCATACCCTTACTTTGCTTTCAAGGATGACCCCAATGAGATTCCCTTGAACTATGTGATGTTTAATCCTAATGCTGGAATGGTTGACCCTAATACAAATCTACACTATGATAACATGCTTTATGCTATGGTTGATGCNGTTGCATTTGCCATTGCTAAGATGGGTTTTAGAGGGATAGAGGTTAGGGTCTCAGAGACTGGTTGGCCTTCAAAAGGAGACCCTAATGAGGTTGGTGCCACCCCACAGAATGCTGCAACTTACAACAGGAACTTGCTGAGGAGGCAAATGGCAAGTGAAGGGACACCTCTCAATCCTAGAATGAGGTTGGAGGTGTACTTGTTTGCATTGTTCAATGAAGATTTAAAGCCTGGTCCAACCTCTGAAAGAAACTATGGTCTTTTTAGACCCGATGAATCTATGACTTATAATGTGGGGTTGTCTACTCTTGCAACCACGTCAGCATCAGCTTCATTTTCTCTTGCCTCCTCTGCCACTAAGATTAAGGTAGCACCACCAAATGGATACCAAAACTTGGTATACTGGATGTTTGTGTACGTGCTGGTCTCAATCCTTTGTGTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01114	58448	60100	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001114s00030044.1	PF00332.13	Glyco_hydro_17	33	347	4.10E-89

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.770
SRR1783600	control	0.711
SRR1783602	moderate drought stress	0.680
SRR1811619	moderate drought stress	0.649

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.773
DRR006520	Root Summer glycyrrhizin high producing strain	1.756
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.673
DRR006524	Root Summer glycyrrhizin low producing strain	3.343
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.442
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.441

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.510
SRR2868004	Drought Stress (root)	1.674
SRR2967015	Control (root)	1.235

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.861
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.072
SRR9715739	Root	0.080
SRR9715742	Root	0.361
SRR9715743	Root	0.272

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.701
SRR8749028	MeJA induced 9h	2.482
SRR8749029	MeJA induced 9h	1.243
SRR8749030	Uninduced	0.793
SRR8749031	Uninduced	0.198
SRR8749032	Uninduced	0.062

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.908
SRR8400027	Control - Root	0.660