Gene detail

Gene detail information of Glyur001114s00030042.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G46210.1	cullin4
NR	XP_007147910.1	hypothetical protein PHAVU_006G165300g [Phaseolus vulgaris]
Swissprot	tr\|Q8LGH4\|CUL4_ARATH	Cullin-4
trEMBL	tr\|V7BPK5\|V7BPK5_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW19904.1}

Sequence

Transcript Sequence

>Glyur001114s00030042.1
GAGACTGTGCCCATTTAGCATAATCTCAAGGCTCGATCTGAGCTTTTTGTTTGGCTGTGAACAAAAAGACACACAACACACNCACACAAATGGTGGTGTTGCTGTGTTGATTGATGACTGTGTTGTTGTTCGTTTGATGTCTCTCCCGACCAAGCGTTCAGGTTCAGCCGGTGCTCCCTCAACCCCTATGAAAAAGGCGAAGCCCTCCGTCGCTTGCTCATTCGACCCCTCAGACGACGTCGTTTTGGACACTTCCTCTATCCCCATGCCCCTCGACGACGATCTCAAACCCGACCTCCCCAATGCCCGCGGCGTCATGGCCGCCAACCTCTCCCGCAAGAAAGCCACACCTCCTCAACCCGCTAAGAAGCTCCTCATCAAGCTCCACAAAGCTAAACCGACATTGCCTACAAATTTCGAGGAGGATACATGGGCAAAACTAAAATCTGCTATTTGTGCTATATTTTTGAAGCAACCTGACTCTTGTGACTTGGAGAAGCTTTATCAGGCTGTGAGTGATCTTTGCCTTTATAAAATGGGTGGAAATCTTTATCAACGGATTGAAAAGGAGTGTGAAGTACACATATCTGCAGCACTACAGTCTTTGGTTGGACAAAGTCCAGATTTGGTTGTATTTCTATCTCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGTTGATGATTCGTGGTATAGCCTTGTATCTGGATAGGACATATGTGAAGCAAGCACCGAATGTACGGTCATTATGGGACATGGGCCTACAACTTTTCCGCAAACATCTTTCATTGTCTCCTGAAGTACAACACAAAACTGTTACTGGTCTTCTACGAATGATTGAAAGTGAAAGATTAGGTGAAGCAGTGGATAGAACTCTTCTAAACCATCTTTTGAAGATGTTTACTGCTCTGGGAATCTATGCAGAAAGCTTTGAGAAGCCATTCCTTGAATGCACGTCTGAATTTTATGCCGCTGAAGGTGTGAAATACATGCAGCAATCAGATGTTCCAGATTACTTGAAGCATGTGGAGACAAGATTACAAGAGGAACATGAAAGATGTTTGATCTACTTGGATGCAAGTACTAGGAAGCCATTGATAGCAACGGCTGAAAAGCAACTTCTTGAACGTCATATACCTGCCATTCTTGATAAGGGTTTCTCTATGCTTATGGATGGGAATCGTATTGAAGACCTTCAAAGAATGTACTCACTCTTTTCAAGGGTCAATGCTCTTGAGTCACTGAGGCAGGCCATCAGTTCATACATCAGGAGAACTGGACAGGGCATTGTTATGGATGAGGAGAAAGATAAAGATATGGTTTCATCCCTTCTGGAATTTAAGGCTTCTCTTGACACAACATGGGAAGAAAGCTTTCTCAAGAATGAAGCATTCTGTAACACCATCAAAGATGCATTTGAACATCTTATCAATCTCCGTCAGCTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCAGGTAATAAGGGTACTTCAGAGGAGGAACTAGAGGGTACACTTGATAAGGTCCTGGTATTATTTAGGTTCATTCAGGGCAAGGATGTGTTTGAGGCATTCTATAAGAAAGATCTTGCTAAAAGACTGCTGTTAGGAAAGAGTGCTTCTATTGATGCGGAAAAATCTATGATCTCTAAGTTGAAGACTGAGTGTGGCAGCCAGTTTACAAACAAACTGGAAGGAATGTTTAAGGACATTGAATTATCGAAAGAAATAAATGAGTCCTTCAAACAGTCATCCCAGGCAAGAACAAAACTCCCATCAGGGATTGAAATGAGTGTGCATGTCTTGACAACTGGNTACTGGCCAACATATCCACCCATGGATGTCAGACTTCCTCATGAATTGAACGTTTACCAGGATATTTTCAAAGAATTTTATTTAAGCAAATACAGTGGAAGGCGTCTGATGTGGCAAAATTCATTAGGTCACTGTGTCCTAAAGGCAGATTTTCTCAAAGGGAAAAAGGAGTTGGCTGTCTCCCTATTTCAGACTGTTGTTCTGATGCTATTCAATGATGCTGAAAAACTAAGCTTTCAAGATATCAAGGACTCTACTGGTATTGAGGACAAGGAACTGAGAAGGACTNTGCAATCACTTGCATGTGGAAAAGTTCGTGTACTACAAAAGATGCCAAAGGGTAGAGATGTGGAAGATGATGACTCATTTATTTTTAATGATGGGTTTACTGCTCCTCTTTACCGTATAAAGGTGAATGCAATTCAGTTGAAAGAGACAGTGGAGGAGAACACAAGCACCACTGAAAGAGTTTTCCAAGACCGTCAATATCAGGTTGATGCTGCTATTGTGAGGATAATGAAGACAAGGAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGCTCAAATTTCCTATAAAACCAGCTGACTTGAAGAAAAGGATCGAAAGCCTGATTGACAGGGAGTATCTGGAGAGGGACAAGAACAATCCTCAAATATACAATTACCTGGCATAGTACATTTTACCTCGTTTCACATTTCAAAGTTTCTTTTTTTAAAAATGACATGGGAGAAGCTTGATGTTTAATCCCTAGTCACATTTGTACAGTAACAACGGATCCCACCCCTTCCCTTTTTTGCCCTTTCATTTGTCGTCAACTGTACTTTAATTGTAAAGCATATTTTCCTCCTTTGAATTTCTTTTTTATTTTCTTAAAAATTCAAAGTTGTTCCCAAAAAAGATCGAGAATTCAAAAGAATTAATAGTTTAACGAGGTGGGAGTCTTTCTTCTCTAGGAGTGCGGTGNGTTATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01114	31253	38815	-

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex

molecular_function
GO:0031625 ubiquitin protein ligase binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001114s00030042.1	PF00888.17	Cullin	99	692	8.60E-187
Glyur001114s00030042.1	PF10557.4	Cullin_Nedd8	720	783	5.60E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.682
SRR1783600	control	43.661
SRR1783602	moderate drought stress	42.980
SRR1811619	moderate drought stress	42.527

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.915
DRR006520	Root Summer glycyrrhizin high producing strain	40.315
DRR006521	Root Winter glycyrrhizin high producing strain	46.388
DRR006522	Root Winter glycyrrhizin high producing strain	45.198
DRR006523	Root Summer glycyrrhizin low producing strain	46.918
DRR006524	Root Summer glycyrrhizin low producing strain	47.342
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.972
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.805

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	61.767
SRR2868004	Drought Stress (root)	65.153
SRR2967015	Control (root)	72.268

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	39.847
SRR9715740	Leaf	36.183
SRR9715741	Leaf	45.550
SRR9715739	Root	5.969
SRR9715742	Root	28.953
SRR9715743	Root	27.189

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	55.391
SRR8749028	MeJA induced 9h	60.799
SRR8749029	MeJA induced 9h	50.678
SRR8749030	Uninduced	37.114
SRR8749031	Uninduced	38.912
SRR8749032	Uninduced	31.248

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	54.724
SRR8400027	Control - Root	52.594