Gene detail information of Glyur001114s00030035 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30135.1 | 6.00E-17 | jasmonate-zim-domain protein 8 |
| NR | XP_003546080.1 | 3.49E-56 | PREDICTED: protein TIFY 5A-like [Glycine max] |
| Swissprot | tr|Q8LBM2|TIF5A_ARATH | 7.00E-23 | Protein TIFY 5A |
| trEMBL | tr|I1MF23|I1MF23_SOYBN | 1.00E-56 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G09980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01114 | 4012 | 7118 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Tify |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001114s00030035.1 | PF06200.9 | tify | 57 | 88 | 4.70E-10 |
| Glyur001114s00030035.1 | PF09425.5 | CCT_2 | 124 | 145 | 1.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.679 |
| SRR1783600 | control | 0.635 |
| SRR1783602 | moderate drought stress | 1.252 |
| SRR1811619 | moderate drought stress | 1.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.529 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.027 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.179 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.560 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 34.300 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.973 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.873 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.661 |
| SRR2868004 | Drought Stress (root) | 14.324 |
| SRR2967015 | Control (root) | 9.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 62.134 |
| SRR9715740 | Leaf | 30.579 |
| SRR9715741 | Leaf | 60.945 |
| SRR9715739 | Root | 16.207 |
| SRR9715742 | Root | 41.733 |
| SRR9715743 | Root | 35.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.557 |
| SRR8749028 | MeJA induced 9h | 17.633 |
| SRR8749029 | MeJA induced 9h | 45.960 |
| SRR8749030 | Uninduced | 76.032 |
| SRR8749031 | Uninduced | 148.763 |
| SRR8749032 | Uninduced | 218.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.305 |
| SRR8400027 | Control - Root | 6.881 |