Gene detail information of Glyur001113s00028459.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G26340.1 | 1.00E-22 | F-box/RNI-like/FBD-like domains-containing protein |
| NR | XP_003532284.2 | 1.42E-163 | PREDICTED: uncharacterized protein LOC100780535 [Glycine max] |
| Swissprot | tr|Q8H1R7|FDL27_ARATH | 6.00E-36 | F-box/FBD/LRR-repeat protein At4g26340 |
| trEMBL | tr|K7LAQ1|K7LAQ1_SOYBN | 9.00E-113 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G46581.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01113 | 33989 | 55111 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001113s00028459.3 | PF08387.5 | FBD | 66 | 115 | 8.90E-11 |
| Glyur001113s00028459.3 | PF00646.28 | F-box | 376 | 411 | 1.20E-05 |
| Glyur001113s00028459.3 | PF07723.8 | LRR_2 | 525 | 549 | 7.70E-05 |
| Glyur001113s00028459.3 | PF08387.5 | FBD | 662 | 711 | 3.70E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.782 |
| SRR1783600 | control | 4.593 |
| SRR1783602 | moderate drought stress | 6.033 |
| SRR1811619 | moderate drought stress | 5.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.489 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.345 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.485 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.480 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.695 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.640 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.588 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.609 |
| SRR2868004 | Drought Stress (root) | 4.524 |
| SRR2967015 | Control (root) | 4.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.662 |
| SRR9715740 | Leaf | 3.821 |
| SRR9715741 | Leaf | 2.637 |
| SRR9715739 | Root | 3.330 |
| SRR9715742 | Root | 7.609 |
| SRR9715743 | Root | 7.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.143 |
| SRR8749028 | MeJA induced 9h | 1.236 |
| SRR8749029 | MeJA induced 9h | 1.017 |
| SRR8749030 | Uninduced | 0.537 |
| SRR8749031 | Uninduced | 0.132 |
| SRR8749032 | Uninduced | 0.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.683 |
| SRR8400027 | Control - Root | 6.488 |