Gene detail information of Glyur001113s00028457.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G26340.1 | 5.00E-24 | F-box/RNI-like/FBD-like domains-containing protein |
| NR | XP_003532284.2 | 2.66E-120 | PREDICTED: uncharacterized protein LOC100780535 [Glycine max] |
| Swissprot | tr|Q8H1R7|FDL27_ARATH | 3.00E-30 | F-box/FBD/LRR-repeat protein At4g26340 |
| trEMBL | tr|K7LAQ1|K7LAQ1_SOYBN | 3.00E-112 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G46581.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01113 | 26251 | 33861 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001113s00028457.1 | PF00646.28 | F-box | 14 | 51 | 2.40E-08 |
| Glyur001113s00028457.1 | PF07723.8 | LRR_2 | 162 | 187 | 0.00013 |
| Glyur001113s00028457.1 | PF08387.5 | FBD | 289 | 335 | 3.70E-10 |
| Glyur001113s00028457.1 | PF00646.28 | F-box | 363 | 391 | 0.00075 |
| Glyur001113s00028457.1 | PF07723.8 | LRR_2 | 509 | 534 | 0.13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.054 |
| SRR1811619 | moderate drought stress | 0.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.155 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.153 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.113 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.014 |
| SRR2967015 | Control (root) | 0.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.038 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.027 |
| SRR9715742 | Root | 0.036 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.038 |
| SRR8749029 | MeJA induced 9h | 0.066 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.067 |
| SRR8400027 | Control - Root | 0.064 |