Gene detail information of Glyur001112s00036226 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G45970.1 | 6.00E-72 | expansin-like A1 |
| NR | XP_004505673.1 | 4.32E-139 | PREDICTED: expansin-like A2-like [Cicer arietinum] |
| Swissprot | tr|Q9LZT4|EXLA1_ARATH | 2.00E-91 | Expansin-like A1 (Precursor) |
| trEMBL | tr|I3SMJ2|I3SMJ2_MEDTR | 2.00E-137 | Uncharacterized protein {ECO:0000313|EMBL:AFK41484.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01112 | 28010 | 31710 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001112s00036226.1 | PF03330.13 | DPBB_1 | 67 | 115 | 1.70E-05 |
| Glyur001112s00036226.1 | PF01357.16 | Pollen_allerg_1 | 128 | 207 | 1.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.213 |
| SRR1783600 | control | 29.452 |
| SRR1783602 | moderate drought stress | 18.077 |
| SRR1811619 | moderate drought stress | 18.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 208.539 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 207.305 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.180 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.051 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 365.711 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 368.706 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.081 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.675 |
| SRR2868004 | Drought Stress (root) | 44.759 |
| SRR2967015 | Control (root) | 60.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 139.021 |
| SRR9715740 | Leaf | 93.136 |
| SRR9715741 | Leaf | 147.354 |
| SRR9715739 | Root | 41.331 |
| SRR9715742 | Root | 159.802 |
| SRR9715743 | Root | 125.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 424.507 |
| SRR8749028 | MeJA induced 9h | 521.283 |
| SRR8749029 | MeJA induced 9h | 879.795 |
| SRR8749030 | Uninduced | 531.413 |
| SRR8749031 | Uninduced | 699.778 |
| SRR8749032 | Uninduced | 549.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.720 |
| SRR8400027 | Control - Root | 69.649 |