Gene detail information of Glyur001111s00035516 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29530.1 | 6.00E-07 | |
| NR | XP_003533837.1 | 1.18E-83 | PREDICTED: suppressor protein SRP40-like [Glycine max] |
| trEMBL | tr|I1L235|I1L235_SOYBN | 4.00E-84 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G10520.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01111 | 82940 | 86932 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.680 |
| SRR1783600 | control | 12.772 |
| SRR1783602 | moderate drought stress | 18.337 |
| SRR1811619 | moderate drought stress | 17.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.649 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.144 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.858 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.396 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.843 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.292 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.981 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.056 |
| SRR2868004 | Drought Stress (root) | 1.767 |
| SRR2967015 | Control (root) | 1.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.989 |
| SRR9715740 | Leaf | 23.702 |
| SRR9715741 | Leaf | 18.885 |
| SRR9715739 | Root | 3.848 |
| SRR9715742 | Root | 9.116 |
| SRR9715743 | Root | 9.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.694 |
| SRR8749028 | MeJA induced 9h | 10.212 |
| SRR8749029 | MeJA induced 9h | 9.844 |
| SRR8749030 | Uninduced | 9.709 |
| SRR8749031 | Uninduced | 7.846 |
| SRR8749032 | Uninduced | 4.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.278 |
| SRR8400027 | Control - Root | 15.511 |