Gene detail information of Glyur001111s00035514 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G46530.1 | 5.00E-66 | AWPM-19-like family protein |
| NR | NP_001237651.1 | 8.99E-103 | uncharacterized protein LOC100527291 [Glycine max] |
| trEMBL | tr|C6T3W1|C6T3W1_SOYBN | 3.00E-103 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G23230.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01111 | 75810 | 77054 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001111s00035514.1 | PF05512.6 | AWPM-19 | 15 | 155 | 1.10E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.853 |
| SRR1783600 | control | 0.917 |
| SRR1783602 | moderate drought stress | 0.972 |
| SRR1811619 | moderate drought stress | 1.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.559 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.466 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.156 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.127 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.625 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.400 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.533 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.930 |
| SRR2868004 | Drought Stress (root) | 27.501 |
| SRR2967015 | Control (root) | 29.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.586 |
| SRR9715740 | Leaf | 0.435 |
| SRR9715741 | Leaf | 0.086 |
| SRR9715739 | Root | 0.554 |
| SRR9715742 | Root | 5.349 |
| SRR9715743 | Root | 3.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.023 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.279 |
| SRR8400027 | Control - Root | 6.289 |