Gene detail

Gene detail information of Glyur001110s00027598

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66920.1	0	SKU5 similar 17
NR	XP_003550083.1	0	PREDICTED: L-ascorbate oxidase homolog [Glycine max]
COG	YP_003188427.1	2.00E-13	multicopper oxidase/copper resistance protein CopA [Acetobacter pasteurianus IFO 3283-01]
Swissprot	tr\|P29162\|ASOL_TOBAC	0	L-ascorbate oxidase homolog (Precursor)
trEMBL	tr\|I1MW17\|I1MW17_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G21490.1}

Sequence

Transcript Sequence

>Glyur001110s00027598.1
ATGAATGATCAAATTTGCTGCTGCCTTAAAAACTCAATGGGTAGCACAGGTTTGCTCCCTCTGCTGTGTGTTGCTGTTGTGGCTCTGCTTAGTGTTTCTGTGGTGCAAGCAGAAGATGCATACAAATATTTTACATGGACCGTTACTTATGGAACTCTTTCTCCACTAGGTAGTCCCCAGCAGGTGATTCTGATCAATGGCCAGTTTCCTGGGCCTCAATTAGACTTGGTAACCAATGACAATGTAATTCTCAACCTTGTCAACAAGCTGGATGAGCCATTTCTACTCACTTGGAATGGCATTAAACAAAGGAAAAATTCATGGCAAGATGGGGTATTGGGAACCAACTGCCCCATTGCCCCAAACACAAATTACACATACAAGTTTCAGGCCAAGGACCAGATTGGAACCTACACATACTTTCCATCGACTCAACTGCATAAAGCAGCTGGAGGGTTTGGAGGACTCAATGTCTATCATAGATCTGTCATCCCAGTGCCTTATCCATACCCAGATGGAGATTTTACTTTACTCATTGGTGATTGGTACAAGACCAGCCACAAGNCATTACGGGAGTCATTGGATTCTGGAAAATCTCTTGCCTTTCCCGATGGTCTACTTATCAATGGCCAGGCTCATACAACCATAAATGGTGATCAGGGAAAGACGTACATGTTCAGGATCTCAAATGTGGGCATGTCAACCTCAATTAACTTCAGAATTCAGGGTCATGCAATGAAACTAGTTGAGGTGGAAGGATCACACCTTGTCCAGAACACATACGACTCCCTTGATGTGCATGTTGGGCAATCAGCTTCTGTGTTGGTAACCTTAAATCAGCCTCCAAANGACTACTACATTGTTGCCTCCACAAGGTTTTCCAGAAAGGTTCTCACAGCAACCGCAGTGTTACACTATACAAACTCTCACTCCCCTGCTTCTGGACCCTTGCCTAGCCCCCCTGCTTACCAATATCACTGGTCTGTGAAGCAAGCTAGAAGCTTCAGGCCTAACCCACAAGGATCATTCCACTATGGGAGAATAACTCCTACAAAGACAATCGTGTTGGCCAATTCAGCACCTTTNATTAATGGGAAACTGCGTTATGCTGTTAATAAGGTTTCTTATGTTAACCCTGATACCCCTCTCAAGCTTGCTGACTACTTCAACATTCCCGGAATCTACAGTGTGGACTCAATACAAAGCCTCCCTTCTAATAATGGTCCTGCATACATAGCTACCTCCGTGCTGCCAACTTCTCTTCATGATTTTATTGAGGTTGTTTTCCAGAACAATGAAAACACCATGCAATCTTGGCATCTTGACGGTTATGATTTTTGGGTTGTGGGTTATGGTTTCGGCCAGTGGACACCAGCCAAGAGAAGAACCTATAATTTAGCGGATGCCCTGACCAGGCACACTGCACAGGTGTATCCAAACGCTTGGACTGTGATATTGGTGTCGTTGGACAACCAAGGAATGTGGAACCTGAGATCTGCAATTTGGGAAAGACAGTATCTTGGGCAGCAGTTATATCTCAGGGTTTGGAATGCTCAGCATAGCCTTGCCAATGAATACGATATACCCAATAATAGCACCATTTTTGCTCCAGTTTTTCTTGGGATTTTGGCTTGCTGGAGTGCACTCTCGGTTATTGCAGAAGACCGATATTTGTTTTTCACATGGGAAGTTACTTATGGAACAATTTCTCCTCTTGGTGTACCTCAACAGGGCATTCTTATTAATGGCCAATTTCCAGGCCCTACAATTGAAGCCATCACTAATGACAATATAGTTGTGAATGTCATTAACAAGAGTGGTATAAAACAGAGAAGGACATCATGGCAAGATGGAGTTTTAGGAACAAACTGTCCAATCCCTCCCAACTCCAACTGGACATACAAATTTCAAGTGAAAGACCAAGTTGGAACCTACACATATTTCCCATCAACCAAAATCCATAAAGCTGCAGGTGGTTTCGGGGGATTCAACATTGCCCAGAGGTCTGTTATATCCATCCCATATCCTGCCCCTGACGGAGAATTCACCTTGCTTGTTGGTGATTGGTACAAGACCAACCACAAGGTACTAAGGAGACTAATGGACCTTGGAAGGAGCCTTCCTTTTCCNGATGCTCTCCTTATAAATGGCCAAAAAGATGCTGCTGTGTTTACTGGGGAAGCAGGGAAGACATACAAGTTCAGGGTGTCCAATGTTGGGATAGCAACCTCAATTAATTTCCGGATACAGGGCCATGCGTTAAAGCTCATTGAAGTCGAAGGTGCTCACACATTGCAGGAAACGTACGAGTCCCTCGATATTCATGTGGGACAGTCAATGACTTTTTTGGTCACACTCAATGGGTCAACAAGTGACTATCTCATTGCTGCATCTAGCCGTTTCACAAAGCCTGTTCTCACCACCACAGCAACCCTTCGCTATGCTGGCTCCAATACAAATGCAGCTCGGCCAAATCCTCAGGGGTCCTTCCACTACGGAACCATCCCCGTCGTAAGGACCCTTCAATTGGCAAATTCTAAAGCCATATCGAACGGAAAGTTACGATATGCAGTGAATGGGATATCATACATCAACCCAAGCACCCCATTGAAGCTTGCCGATTGGTTTAACATTCCCGGTGTCTTTGATTTCAATACAATCAGAGATGTTCCTCCTCCTCTAGGCACCCCCATCAAACTGGGAACATCCGTCGTGAATTTCACCCTTCATGACTTCGCAGAAATAATCTTCCAGAACAATGAGAACACCATTCAGTCCTGGCACATGGATGGATCTAGCTTCTATGTTGTTGGATTTGGCAAAGGCATCTGGACACCCGATGTGAGAAAGACTTACAACTTGGTTGATGGTATTACAAGATACACTGTTCAGGTGTATCCAAACTCTTGGACTGCAATAATGGTGTCTTTGGACAATAAGGGTATGTGGAATTTGAGGTNTGCAATATGGGAAAGACGGTACTTGGGACAAGACTTGTATCTCAGGGTGTGGAACGATGAGCCGAGCGTATACACTGAGGCTAATATCCCTCCCAATGCATTGTTCTGTGGCAAGGCTAAACACCTGCACAGGTCGTAAGACGCACACAAGGGACGATTTAAAATTTGATTCTTGGCATCAGTAATTAGTTTGTAACTCTGATCGGTTTTCTTTTCATTCTTATCNT

Protein Sequence

>Glyur001110s00027598.1
MNDQICCCLKNSMGSTGLLPLLCVAVVALLSVSVVQAEDAYKYFTWTVTYGTLSPLGSPQQVILINGQFPGPQLDLVTNDNVILNLVNKLDEPFLLTWNGIKQRKNSWQDGVLGTNCPIAPNTNYTYKFQAKDQIGTYTYFPSTQLHKAAGGFGGLNVYHRSVIPVPYPYPDGDFTLLIGDWYKTSHKXLRESLDSGKSLAFPDGLLINGQAHTTINGDQGKTYMFRISNVGMSTSINFRIQGHAMKLVEVEGSHLVQNTYDSLDVHVGQSASVLVTLNQPPXDYYIVASTRFSRKVLTATAVLHYTNSHSPASGPLPSPPAYQYHWSVKQARSFRPNPQGSFHYGRITPTKTIVLANSAPXINGKLRYAVNKVSYVNPDTPLKLADYFNIPGIYSVDSIQSLPSNNGPAYIATSVLPTSLHDFIEVVFQNNENTMQSWHLDGYDFWVVGYGFGQWTPAKRRTYNLADALTRHTAQVYPNAWTVILVSLDNQGMWNLRSAIWERQYLGQQLYLRVWNAQHSLANEYDIPNNSTIFAPVFLGILACWSALSVIAEDRYLFFTWEVTYGTISPLGVPQQGILINGQFPGPTIEAITNDNIVVNVINKSGIKQRRTSWQDGVLGTNCPIPPNSNWTYKFQVKDQVGTYTYFPSTKIHKAAGGFGGFNIAQRSVISIPYPAPDGEFTLLVGDWYKTNHKVLRRLMDLGRSLPFPDALLINGQKDAAVFTGEAGKTYKFRVSNVGIATSINFRIQGHALKLIEVEGAHTLQETYESLDIHVGQSMTFLVTLNGSTSDYLIAASSRFTKPVLTTTATLRYAGSNTNAARPNPQGSFHYGTIPVVRTLQLANSKAISNGKLRYAVNGISYINPSTPLKLADWFNIPGVFDFNTIRDVPPPLGTPIKLGTSVVNFTLHDFAEIIFQNNENTIQSWHMDGSSFYVVGFGKGIWTPDVRKTYNLVDGITRYTVQVYPNSWTAIMVSLDNKGMWNLRXAIWERRYLGQDLYLRVWNDEPSVYTEANIPPNALFCGKAKHLHRS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01110	26277	39255	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001110s00027598.1	PF07732.10	Cu-oxidase_3	48	161	1.90E-36
Glyur001110s00027598.1	PF00394.17	Cu-oxidase	174	308	3.20E-38
Glyur001110s00027598.1	PF07731.9	Cu-oxidase_2	382	518	4.90E-29
Glyur001110s00027598.1	PF07732.10	Cu-oxidase_3	564	668	3.10E-28
Glyur001110s00027598.1	PF00394.17	Cu-oxidase	681	816	1.80E-34
Glyur001110s00027598.1	PF07731.9	Cu-oxidase_2	882	1007	4.40E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.017
SRR1783600	control	42.099
SRR1783602	moderate drought stress	36.539
SRR1811619	moderate drought stress	36.671

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	179.066
DRR006520	Root Summer glycyrrhizin high producing strain	177.675
DRR006521	Root Winter glycyrrhizin high producing strain	0.116
DRR006522	Root Winter glycyrrhizin high producing strain	0.116
DRR006523	Root Summer glycyrrhizin low producing strain	27.731
DRR006524	Root Summer glycyrrhizin low producing strain	27.389
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.480
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.517

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	128.908
SRR2868004	Drought Stress (root)	63.341
SRR2967015	Control (root)	79.346

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.698
SRR9715740	Leaf	0.019
SRR9715741	Leaf	0.388
SRR9715739	Root	22.926
SRR9715742	Root	4.725
SRR9715743	Root	7.779

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.174
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.146
SRR8749030	Uninduced	0.115
SRR8749031	Uninduced	0.036
SRR8749032	Uninduced	0.015

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	63.234
SRR8400027	Control - Root	136.367