Gene detail

Gene detail information of Glyur001110s00027597

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07640.2	3.00E-27	Dof-type zinc finger DNA-binding family protein
NR	KEH20497.1	2.30E-100	Dof domain zinc finger protein [Medicago truncatula]
Swissprot	tr\|O82155\|DOF17_ARATH	3.00E-33	Dof zinc finger protein DOF1.7
trEMBL	tr\|A0A072TSV2\|A0A072TSV2_MEDTR	9.00E-101	Dof domain zinc finger protein {ECO:0000313\|EMBL:KEH20497.1}

Sequence

Transcript Sequence

>Glyur001110s00027597.1
ATGATCCATGAACTGTTGGGTGGTGGTGTTAGTGCTACTGCTACCCTCCTAGCAGGAGAAAGAAACCCCTCTAATTCCATTAACGGAGGAGCAGGAGGAGGAGTTCTACTAGTACTACCACCAACTACACAATCTCCTTCTTCCACAACCACTGTAACTGCCACCGCCACGTCATCGGTTTCGGAAAACCAAAACCTGAGGTGTCCGCGATGCGATTCCTCAAACACCAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACGTGTCGCCGCTACTGGACCAAAGGCGGCGCTCTCAGGAACGTCCCCATCGGAGGGGGATGCCGGAAAAACAGGAGCATCTCCGGCTTGTCGAACTCATCGGCGGCGGCGAAAACCACCGCCGCCGCTAAGATGAAAACGGTTGCATCGGAGTTCGTCAATGGAAGGTCACCATCATCGGGATCACTACTTGGTCATGGTCATGGCTTTGAAATCGAACGTGAAGTACTTCCACCAGCACCACCAAGCCAAATCCTATGGGGTTCTCCTCAGAATAGTTCTCAATCTCATGTGTTGGCTTTGCTTAGAGCTAGCCAAAACCCTAACCCTAACACTGTTAGCGCTGTTGCAGTGAAGGAAGANGGGAATTACTTAAACTTGATGGGGTCACACTCACAGTCTCACATGGTGACAGAGCCATTGGTTTCAATTAATTCAAATGGGTTGCTGAATAATAATCGAAGCTATGATGGTGGTGTTGGGAATGTTCTGTGCAGTTCATTTTGGAGAAACAATCAAGATCATCAACCTCAACAACAACAACAGAATGGAGGCTTTTTACTTGGGGAACAAACACAATATCAAAACAGTAATGGGATCCAAGGACTTTATCAGAAGCTGATCAGGTCATCATCGGGTAATAATAATTATTGCAGTGGTGAAACCTCACCAGTGTTTCTGGGGAACGTGGCTTCTAATTCATCTTCTATATNCAACATTTTGGAGTCAACTTCAGTTGCAGGGGGTGAATTGGGGTACTGGAATCCAACCCTTTCTTGGTCTGATCTACCAACCACCACCAATGGTGCATATCCGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01110	22998	24098	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001110s00027597.1	PF02701.10	zf-Dof	62	121	2.20E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.637
SRR1783600	control	31.822
SRR1783602	moderate drought stress	49.522
SRR1811619	moderate drought stress	49.014

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.207
DRR006520	Root Summer glycyrrhizin high producing strain	41.887
DRR006521	Root Winter glycyrrhizin high producing strain	7.427
DRR006522	Root Winter glycyrrhizin high producing strain	7.098
DRR006523	Root Summer glycyrrhizin low producing strain	25.851
DRR006524	Root Summer glycyrrhizin low producing strain	26.936
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.716
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.740

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.878
SRR2868004	Drought Stress (root)	18.966
SRR2967015	Control (root)	20.254

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.719
SRR9715740	Leaf	1.768
SRR9715741	Leaf	1.827
SRR9715739	Root	31.111
SRR9715742	Root	52.001
SRR9715743	Root	45.558

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.989
SRR8400027	Control - Root	37.657