Gene detail

Gene detail information of Glyur001109s00030194.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40490.1	5.00E-114	Uroporphyrinogen decarboxylase
NR	KHN31331.1	2.60E-170	Uroporphyrinogen decarboxylase, chloroplastic [Glycine soja]
COG	YP_007162110.1	8.00E-113	uroporphyrinogen decarboxylase [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|Q42967\|DCUP_TOBAC	3.00E-163	Uroporphyrinogen decarboxylase, chloroplastic (Precursor)
trEMBL	tr\|C6TEE8\|C6TEE8_SOYBN	1.00E-170	Uroporphyrinogen decarboxylase {ECO:0000256\|RuleBase:RU000554}

Sequence

Transcript Sequence

>Glyur001109s00030194.1
ACAGTTGCTGAACCAAGGACAAGTACTGCTGCTGCAGAACCTCTTTTTCTTAACGCGGTTCGTGGGAAAGATGTTGAAAGACCCCCAGTTTGGCTCATGAGGCAAGCAGGGAGGTACATGAAGGCAGCACAGCTTTGTTCTGCCAAATTGGTTGGATTTTCGTCCTGCATGAATTGCTGGTGATCTAATTCGCTAACCCTTATTAACCAGAGTTACCAAGTCATCTATGAGAAATATCCTTCATTTCGTGTNAGATCTGAAAATGTTGATCTTGTAGTGGAAATTTCACTGCAACCATGGAAAGTTTTCAAGCCTGATGGGGTGATTTTATTCTCAGATATTCTNACCCCACTTTCTGGAATGAATATACCCTTTGATATTGTGAAGGGTAAAGGTCCTATCATATTTGATCCTATTAGCACAGCTGCCCAGGTTGATAAAGTGAGGGAGTTTGTTCCTGAAGATTCAGTTCCATATGTTGGTGAAGCACTGACAATTTTGAGGAAAGAGGTGGATAATAAAGCTGCAGTCCTTGGTTTTGTNGGGGCTCCATTCACCCTGGCATCGTATGTGGTTGAAGGTGGTTCATCAAAACACTTCTCAAAAATAAAGAAATTGGCTTTCTCTGAACCCAAGGTCCTCCACTCATTACTAAAAAAGTTTACAAAGTCAATGGCAAGATACATTCAATACCAAGCTGACAATGGNGCTCAGGCTGTTCAGATCTTTGACTCATGGGCAACAGAGCTTAGTCCAGTGGATTTTGAAGAATTCAGTTTGCCTTACTTGAAGCAGATTGTAAATATTGTGAAGAAAACACATCCACAACTCCCTTTAATCCTTTATGCAAGTGGGTCAGGGGGATTGCTNGAGCNGCTAACTTCNTCGGGNGTGGANGTAATTAGCNTGGATTGGACGGTNGACATGGCGGATGGTAGGAGGAGGNTGGGACCAAATGTAGTACTCCAGGGTAACGTGGATCCCGGTGTTCTTTTCGGTTCNAAAGAGTTCATCACTCAGAGAATAAACGATACTGTGAGAAAAGCAGGTAGGGGAAAACATATCTTGAATCTTGGTCATGGCATTGTAGTAGGAACGCCTGAGGAGAATGTTGCTCACTTTTTTGAGGTTGCCAAAGATATTAGATACTAAGTGTGCGTGTGTGTGTTTGGGCAAAAAGGCTTGCAAACTTGAATTTAGATATCTTGGTTTTGCAAAGTAGATTTTAGTGAAAAGTATATTTGATGTGAAATGAATTATGTTTAGATAGAATATAAGATTATTATCAAGAACTCTAATTGCTTAATATCATAACCCAGATCTAAGTCCAACAACTTGCTATCTGAGGCCCTAACCCTGACTCCTCCCNCAAAGATTTTGAGATTACCAATAGAGTGTATATCAACCATACAAGAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01109	12254	15434	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01599	hemE, UROD	EC:4.1.1.37	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process
GO:0006779 porphyrin-containing compound biosynthetic process

molecular_function
GO:0004853 uroporphyrinogen decarboxylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001109s00030194.1	PF01208.12	URO-D	1	260	3.50E-82

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.144
SRR1783600	control	1.086
SRR1783602	moderate drought stress	1.354
SRR1811619	moderate drought stress	1.179

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.172
DRR006520	Root Summer glycyrrhizin high producing strain	2.134
DRR006521	Root Winter glycyrrhizin high producing strain	2.314
DRR006522	Root Winter glycyrrhizin high producing strain	2.366
DRR006523	Root Summer glycyrrhizin low producing strain	1.085
DRR006524	Root Summer glycyrrhizin low producing strain	0.778
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.344
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.364

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.320
SRR2868004	Drought Stress (root)	9.553
SRR2967015	Control (root)	10.014

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.533
SRR9715740	Leaf	23.774
SRR9715741	Leaf	20.715
SRR9715739	Root	0.718
SRR9715742	Root	1.364
SRR9715743	Root	0.720

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.464
SRR8749028	MeJA induced 9h	7.598
SRR8749029	MeJA induced 9h	8.538
SRR8749030	Uninduced	6.747
SRR8749031	Uninduced	3.207
SRR8749032	Uninduced	5.582

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.249
SRR8400027	Control - Root	10.776