Gene detail information of Glyur001108s00026763 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45700.1 | 5.00E-53 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| NR | XP_004485939.1 | 3.83E-152 | PREDICTED: probable C-terminal domain small phosphatase-like isoform X1 [Cicer arietinum] |
| COG | YP_007147155.1 | 9.00E-15 | TFIIF-interacting CTD phosphatase [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|Q5S7T7|TIM50_PHYIN | 9.00E-24 | Mitochondrial import inner membrane translocase subunit TIM50 (Precursor) |
| trEMBL | tr|G7ILM8|G7ILM8_MEDTR | 2.00E-146 | NLI interacting factor-like phosphatase {ECO:0000313|EMBL:AES64058.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01108 | 85892 | 86758 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001108s00026763.1 | PF03031.13 | NIF | 115 | 274 | 3.40E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.490 |
| SRR1783600 | control | 1.527 |
| SRR1783602 | moderate drought stress | 0.859 |
| SRR1811619 | moderate drought stress | 1.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.344 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.153 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.014 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.638 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.536 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.996 |
| SRR2868004 | Drought Stress (root) | 2.611 |
| SRR2967015 | Control (root) | 4.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.569 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.701 |
| SRR9715739 | Root | 4.081 |
| SRR9715742 | Root | 0.723 |
| SRR9715743 | Root | 1.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.338 |
| SRR8749028 | MeJA induced 9h | 6.825 |
| SRR8749029 | MeJA induced 9h | 5.115 |
| SRR8749030 | Uninduced | 0.202 |
| SRR8749031 | Uninduced | 0.580 |
| SRR8749032 | Uninduced | 2.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.005 |
| SRR8400027 | Control - Root | 2.523 |