Gene detail information of Glyur001108s00026762


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G01410.13.00E-152Aldolase-type TIM barrel family protein
NRXP_003542985.10PREDICTED: pyridoxal biosynthesis protein PDX1-like [Glycine max]
COGYP_002464232.12.00E-159pyridoxal biosynthesis lyase PdxS [Chloroflexus aggregans DSM 9485]
Swissprottr|Q9FT25|PDX1_PHAVU0Pyridoxal biosynthesis protein PDX1
trEMBLtr|I1M1P1|I1M1P1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G29700.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold011088016081089-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K06215pdxS, pdx1EC:4.3.3.6Vitamin B6 metabolismmap00750


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0042819  vitamin B6 biosynthetic process

GO:0042823  pyridoxal phosphate biosynthetic process


molecular_function

GO:0003824  catalytic activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001108s00026762.1PF01680.12SOR_SNZ222287.50E-114


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control181.195
SRR1783600control181.749
SRR1783602moderate drought stress69.410
SRR1811619moderate drought stress69.201

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain103.803
DRR006520Root Summer glycyrrhizin high producing strain102.970
DRR006521Root Winter glycyrrhizin high producing strain172.747
DRR006522Root Winter glycyrrhizin high producing strain166.320
DRR006523Root Summer glycyrrhizin low producing strain83.749
DRR006524Root Summer glycyrrhizin low producing strain85.067
DRR006525Leaf Summer glycyrrhizin high producing strain421.367
DRR006526Leaf Summer glycyrrhizin high producing strain476.854

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)144.148
SRR2868004Drought Stress (root)86.547
SRR2967015Control (root)64.491

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf443.872
SRR9715740Leaf757.127
SRR9715741Leaf294.285
SRR9715739Root276.129
SRR9715742Root360.056
SRR9715743Root338.221

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h125.444
SRR8749028MeJA induced 9h120.578
SRR8749029MeJA induced 9h135.154
SRR8749030Uninduced54.624
SRR8749031Uninduced24.607
SRR8749032Uninduced87.054

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root175.889
SRR8400027Control - Root159.369

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved