Gene detail information of Glyur001108s00026760 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G21930.2 | 6.00E-17 | P-type ATPase of Arabidopsis 2 |
| NR | XP_006580903.1 | 8.13E-44 | PREDICTED: chloroplast copper-translocating HMA8 P-ATPase isoform X1 [Glycine max] |
| Swissprot | tr|B9DFX7|HMA8_ARATH | 4.00E-19 | Copper-transporting ATPase PAA2, chloroplastic (Precursor) |
| trEMBL | tr|I1K8G7|I1K8G7_SOYBN | 3.00E-44 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G05890.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01108 | 70386 | 70808 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001108s00026760.1 | PF00403.21 | HMA | 85 | 131 | 1.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.711 |
| SRR1783600 | control | 8.373 |
| SRR1783602 | moderate drought stress | 6.464 |
| SRR1811619 | moderate drought stress | 6.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.424 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.023 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.130 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.129 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.622 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.455 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.738 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.365 |
| SRR2868004 | Drought Stress (root) | 0.384 |
| SRR2967015 | Control (root) | 0.299 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.638 |
| SRR9715740 | Leaf | 4.221 |
| SRR9715741 | Leaf | 0.211 |
| SRR9715739 | Root | 2.924 |
| SRR9715742 | Root | 0.566 |
| SRR9715743 | Root | 0.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.186 |
| SRR8749029 | MeJA induced 9h | 0.063 |
| SRR8749030 | Uninduced | 0.036 |
| SRR8749031 | Uninduced | 0.198 |
| SRR8749032 | Uninduced | 0.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.540 |
| SRR8400027 | Control - Root | 1.810 |