Gene detail

Gene detail information of Glyur001108s00026758

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18910.1	5.00E-102	NOD26-like intrinsic protein 1;2
NR	NP_001242005.1	1.77E-165	uncharacterized protein LOC100812577 [Glycine max]
COG	YP_005009762.1	3.00E-57	MIP family channel protein [Niastella koreensis GR20-10]
Swissprot	tr\|Q8LFP7\|NIP12_ARATH	1.00E-123	Aquaporin NIP1-2, N-terminally processed
trEMBL	tr\|C6TL07\|C6TL07_SOYBN	7.00E-166	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU23597.1}

Sequence

Transcript Sequence

>Glyur001108s00026758.1
ATGGCTGATAATTCAGCAAGAAATGGAAACCACCACCAGGTGGTTTTAAATGTAAACGGTGATGCCTCCAAAAACTGTGACGCCTCAAGCATCGAAGACACTGTGCCTCTTTTGCAGAAGTTGGTGGCAGAGTTGGTGGGCACATACTTCCTGATATTTGCAGGTTGTGCTGCTGTGGTGGTGAACCTTAACAGTGAGAAGGCGATAACACAACCTGGGATTTCAATTGTTTGGGGACTCGCTGTTATGGTGTTGGCTTACTCTCTTGGCCACGTCTCTGGTGCTCATTTCAATCCAGCTGTCACCCTTGCTCATGCTTCCACCAAAAGGTTTCCCTTGAAGCAGGTACCAGCTTATATAATAGCTCAGGTTGTTGGATCCACACTTGCAAGTGGAACTCTCAGACTTATATTCAATGGCAAGGAGAACCATTTTGCAGGAACACTCCCTGCTGGCTCTAACCTTCAAGCATTTGTGGTCGAATTCATAATCACTTTCTACCTCATGTTTGTCATTTCTGGAGTAGCCACCGATAACAGAGCGATTGGTGAGTTGGCTGGGCTTGCAGTTGGGTCTACGATACTGCTGAATGTGATGTTTGCCGGGCCAATCACAGGAGCATCAATGAATCCAGCAAGAAGCTTAGGACCTGCAATTGTGCACCATGAGTACAGAGGGATATGGGTATATTTGGTGTCACCATTTCTTGGAGCTTTGGCTGGTACATGGGCCTACAATTTCATCAGATACACCAATAAGCCAGTGCGTGAACTCACTCAGAGTGCCTCTTTTCTCAAAGAAGCAGTTCGTGATCACTGTGTGTTAGGTTCAACAAGCAGTGAAAGCCACGAGGTGGTTGTAAATATAAGCAGTGAAGCCTCCAAAAAGTGCGACGATTNAACCATCGTAGAAAACGTTCCTCTTTTGCAGAAGTTGGTAGCAGAGGCGGTGGGAACATACTTCCTGATATTTGCAGGCTGTGCTGCTGTTGTGGTGAACCTTAACAGTGACAAGGTGGTAACACATCCTGGGATTTCAATTGTTTGGGGACTCACTGTTATGGTGTTGGCTTATTCTCTTGGCCACATCTCTGGCGCTCATTTCAATCCAGCTGTCACCCTTGCTCATGCTTCCACCAAAAGGTTTCCCTTGAAGCAGGTGCCAGCCTATATAATAGCTCAGGTCATTGGATCCACACTCGCAAGTGGAAGTCTCAGACTTATATTCAGTGGCAAGGAAAACCAATTTGCAGGAACACTACCAGCCGGTTCTAACCTTCAAGCATTTGTAGTTGAATTCATAATCACTTTCTTCCTCATGTTTGTCATTTCTGGAGTCGCCACTGATAACAGAGCGATTGGTGAGTTGGCTGGACTTGCAGTTGGGTCTACGGTTCTGATAAATGTGTTGTTTGCGGGACCCATTACTGGAGCATCAATGAATCCAGCAAGAAGCTTAGGGCCTGCTATTGTGCACCATGAGTACAGAGAAATATGGGTTTATTTTGTGTCACCGATTCTGGGAGCTTTGGCTGGTACATGGGTCTACAGTTTCATGAGGTACACGAACAAGCCAGGCAAATCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01108	59569	66326	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001108s00026758.1	PF00230.15	MIP	34	245	2.80E-62
Glyur001108s00026758.1	PF00230.15	MIP	305	516	2.00E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.024
SRR1783600	control	1.026
SRR1783602	moderate drought stress	0.780
SRR1811619	moderate drought stress	1.024

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.523
DRR006520	Root Summer glycyrrhizin high producing strain	0.401
DRR006521	Root Winter glycyrrhizin high producing strain	0.693
DRR006522	Root Winter glycyrrhizin high producing strain	1.525
DRR006523	Root Summer glycyrrhizin low producing strain	0.103
DRR006524	Root Summer glycyrrhizin low producing strain	0.164
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.381
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.236

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.962
SRR2868004	Drought Stress (root)	15.975
SRR2967015	Control (root)	3.716

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.085
SRR9715740	Leaf	2.653
SRR9715741	Leaf	3.393
SRR9715739	Root	0.906
SRR9715742	Root	1.110
SRR9715743	Root	0.715

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.066
SRR8749028	MeJA induced 9h	2.809
SRR8749029	MeJA induced 9h	0.887
SRR8749030	Uninduced	1.788
SRR8749031	Uninduced	2.195
SRR8749032	Uninduced	1.994

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.764
SRR8400027	Control - Root	6.547