Gene detail information of Glyur001108s00026755 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18670.1 | 1.00E-43 | Ankyrin repeat family protein |
| NR | XP_003541685.2 | 0 | PREDICTED: alpha-latroinsectotoxin-Lt1a-like [Glycine max] |
| Swissprot | tr|Q9C7A2|Y3236_ARATH | 1.00E-12 | Ankyrin repeat-containing protein At3g12360 |
| trEMBL | tr|K7M174|K7M174_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G29675.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01108 | 45227 | 52676 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001108s00026755.1 | PF12796.2 | Ank_2 | 50 | 119 | 1.50E-07 |
| Glyur001108s00026755.1 | PF13962.1 | PGG | 585 | 697 | 5.60E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.953 |
| SRR1783600 | control | 2.020 |
| SRR1783602 | moderate drought stress | 1.009 |
| SRR1811619 | moderate drought stress | 0.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.343 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.292 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.016 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.017 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.407 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.408 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.514 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.257 |
| SRR2868004 | Drought Stress (root) | 6.027 |
| SRR2967015 | Control (root) | 7.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.925 |
| SRR9715740 | Leaf | 0.313 |
| SRR9715741 | Leaf | 1.112 |
| SRR9715739 | Root | 0.189 |
| SRR9715742 | Root | 0.855 |
| SRR9715743 | Root | 0.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.003 |
| SRR8749028 | MeJA induced 9h | 0.051 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.055 |
| SRR8749031 | Uninduced | 0.012 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.587 |
| SRR8400027 | Control - Root | 2.437 |