Gene detail

Gene detail information of Glyur001108s00026754.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23540.2	5.00E-49	Mov34/MPN/PAD-1 family protein
NR	XP_004517258.1	2.51E-58	PREDICTED: 26S proteasome non-ATPase regulatory subunit 14-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q9LT08\|PSDE_ARATH	4.00E-57	26S proteasome non-ATPase regulatory subunit 14 homolog
trEMBL	tr\|A0A096QBA4\|A0A096QBA4_MAIZE	4.00E-58	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM2G033626_P04}

Sequence

Transcript Sequence

>Glyur001108s00026754.1
ATGGCTATTTCACCACCGCCCCCCATCCTTCCTATATCAATACTACCACCTCCTAAACCAACAGTAGCAGACAACACCACCATCACCTCCTTCAACCGTTCCTCACCACGACCAGTCCTAACCACTCATTCTCCCTATTTCTCTCATCCAAAGCCGAGTCCAGGTACCACTGTTCACTCTGTGTTTTCGCTTTCATCGCCAAGTGCTTTCACCGAATCTCCATCAGAACTGCAACACCATTATGGGTCTCGTTCTCAGCCGCCCATGGATGGCACAACTCAGCAGATTTCGGCAAGGTCTGTGCCGAAACCATCAGACCGAAAATTACGAGCAACAGCCACGGAGGTCCAAGCCGCAGTGAGGTCAGCCATGCCCCCACCGCCAACAAAGCCGCCGGACACTAACCCACTTCCGTCGCCGCCACAGACTCCACCAGAGCCAAGATTTCCCACACCGCCTCCACCACTGTATCCGCCACCATCACAAACATTTCCTACAGAAACGATGAGGACGAAACGAAGGGACATACATGAGCCGTCCGCACCAACTATAATTCTACACCTTCCGCCTACTCCGTTCGATTTCCACTGCCCACTTGAGATTTCCTCTGAACCGTCCAAAATCATTCCGTTTTGCACACCCAACAACGGCCAACAGCCACACGATTTGGGTCGTCCTATTATCGCTCAATCTGAGCCGTATGCAAAAAGCATGATCCATTTGCTTACACGGGATTCCCATGTGCTACTATTGTTGTTTGGTCAGAGCACAAAAGGCGGTTTTCCCTTGAGGGTGCCACCTGCTCCACACGCCTTTACAGCTGTCAAGCACATGTCACTCAACCCTCACAAGGGTGAACATGGGATTTCTCTGTCCAGAGCTTCCTTGGTTATGATTAGCAACACTTTATCATGGAGCATTGACAAGAAGGAAAACCGTGAAGATAGAACAGTAATACTATTTCCAAAACTTGAATTCGGTGCCCCAAGAAATTTTGCTGCAGCAATACTGATGCATGATCCTAGAATGATGAAACTCTTACATGATGGCCACGTGGCACCAAAAAAGGGTCTTGATGCTGTTCCTCGTGATATTAGAATCAATGACCCATGGTTTGAAGTAAATGGCTACAACCTTGATGATAGTGCAAATAGGTGGAAGAACTTGGTTTATCATATTTTTGGAGATGAGGAGTACTTTGGTGCTGAGCCACATTGCTTTTCGTTGTTCTTATATTCTAAAAACCTTACAAATGAACTTGAGGAGAAGATGCTGCTTAATCTTCACAAGAAGAAATGGACTGATGGTTTGACACTTAGGCAATTTGATACACATTCCAAAACTAATGAACAGACTGTTCAGGAAATGCTGAACCTAGCTACCAAATACAACAAGGNTGTCCAAGAGGAAGATGAGCTGCCCCCTGAAAAGCTTGCAATAGCAAATGTGGGAAGACAAGATGCCAAGAAGCACCTTGAAGAGCATGTCTCCAATTTGATGTCTTCCAACATCGTTCGAACTCTTGGAATGATGCTTGACACTGTTGTCTTCTAGAGTTGTCATTTTGGACCTTCTAGTTTCTCTAGCATGTTAAGGAGGCAAGTTATTTGTTACAATTTCGGTTTCCTAATTCTTGTCAAGCTGTAGTTGAAGACAGATGTATTCTTTGGACGAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01108	41871	44986	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH116

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006665 sphingolipid metabolic process

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0004348 glucosylceramidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001108s00026754.1	PF04685.8	DUF608	318	388	1.40E-08
Glyur001108s00026754.1	PF13012.1	MitMem_reg	416	503	9.90E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.104
SRR1783600	control	6.769
SRR1783602	moderate drought stress	4.126
SRR1811619	moderate drought stress	3.573

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.259
DRR006520	Root Summer glycyrrhizin high producing strain	5.833
DRR006521	Root Winter glycyrrhizin high producing strain	5.535
DRR006522	Root Winter glycyrrhizin high producing strain	4.974
DRR006523	Root Summer glycyrrhizin low producing strain	4.312
DRR006524	Root Summer glycyrrhizin low producing strain	3.682
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.905
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.839

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.086
SRR2868004	Drought Stress (root)	2.292
SRR2967015	Control (root)	1.978

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.781
SRR9715740	Leaf	3.607
SRR9715741	Leaf	4.070
SRR9715739	Root	1.323
SRR9715742	Root	4.316
SRR9715743	Root	3.631

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.515
SRR8749028	MeJA induced 9h	1.959
SRR8749029	MeJA induced 9h	2.493
SRR8749030	Uninduced	2.029
SRR8749031	Uninduced	1.083
SRR8749032	Uninduced	0.934

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.481
SRR8400027	Control - Root	7.451