Gene detail information of Glyur001108s00026753 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29760.1 | 2.00E-33 | Putative adipose-regulatory protein (Seipin) |
| NR | KHN06917.1 | 1.62E-46 | Seipin [Glycine soja] |
| trEMBL | tr|V7BPS9|V7BPS9_PHAVU | 1.00E-45 | Uncharacterized protein {ECO:0000313|EMBL:ESW19977.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01108 | 39902 | 40858 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001108s00026753.1 | PF06775.9 | Seipin | 163 | 261 | 4.30E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.460 |
| SRR1783600 | control | 6.310 |
| SRR1783602 | moderate drought stress | 14.912 |
| SRR1811619 | moderate drought stress | 15.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.569 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.546 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.191 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.498 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.200 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.492 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.134 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.549 |
| SRR2868004 | Drought Stress (root) | 4.544 |
| SRR2967015 | Control (root) | 6.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.777 |
| SRR9715740 | Leaf | 0.769 |
| SRR9715741 | Leaf | 3.958 |
| SRR9715739 | Root | 0.501 |
| SRR9715742 | Root | 1.904 |
| SRR9715743 | Root | 1.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.281 |
| SRR8749028 | MeJA induced 9h | 3.534 |
| SRR8749029 | MeJA induced 9h | 0.951 |
| SRR8749030 | Uninduced | 2.159 |
| SRR8749031 | Uninduced | 0.995 |
| SRR8749032 | Uninduced | 0.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.203 |
| SRR8400027 | Control - Root | 8.958 |