Gene detail

Gene detail information of Glyur001107s00036919

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14450.1	3.00E-140	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	XP_003547701.1	0	PREDICTED: GDSL esterase/lipase At5g14450 isoform 1 [Glycine max]
COG	YP_436892.1	7.00E-07	phospholipase/lecithinase/hemolysin [Hahella chejuensis KCTC 2396]
Swissprot	tr\|Q9LY84\|GDL76_ARATH	3.00E-174	GDSL esterase/lipase At5g14450 (Precursor)
trEMBL	tr\|E5LMF9\|E5LMF9_9FABA	0	Acetylcholinesterase {ECO:0000313\|EMBL:ADR66028.1}

Sequence

Transcript Sequence

>Glyur001107s00036919.1
CCCTTCCCCTCCCATCTCATCTTAGAGCTTAATGTTTTTTTGAACCAAAAAATTAGGAACTTTATGCTTTGGGTCTCTATCTCTATCTAGTCTCTATCTCTATCTAGATACAAGCTTGCTCACAAACTTCCCAAGNTAGCTTAACCAAATAGTGAAAAATGGGGTTAGGGGTACTGTTTGTTGGGTTCCTTCTATCTTGTTCTCTATGCGTGAAGGGTGTGGAGCAGAAAGACTCACCCCTTTGTGCTTTCCCTGCAATCTACAACTTTGGTGACTCCAACTCAGANACTGGAGGCATATCAGCTGCATTTGTTCCAATTCCTGGGCCATATGGTGAGGGCTTTTTCCACAAGCCTTCAGGGAGAGACTGTGATGGCCGTCTCATCATAGATTTCATAGCTGAGAAGGTAAAGTTACCATACTTGAGTGCTTATCTGAATTCACTTGGAACCAATTACAGACATGGGGCAAACTTTGCTACAGGAGGATCTACAATTAGGAAGCAGAATGAAACCATATTTGAGTATGGGATAAGTCCCTTCTCACTTGACATTCAAATTATTCAATTTAACCAATTCAAAGCACGCACCAAGCAGCTCTACCAAGAAGCAAACACATCACTTGAAAGAAGCAAGCTTCCTGTGCCTGAGGAGTTCTCTAGGGCTCTCTACACATTCGACATTGGTCAAAATGATCTCTCTGTTGGATTTAGAAAGATGAACTTCGACCAAATGCGTGCATCCATGCCAGATATTGTTAACCAGTTAGCCTCTGCAGTCAAAAATATATACCAACAAGGTGGGAGGACATTCTGGGTACACAACACTGCCCCCATTGGGTGCTTGCCAGTGAACCTATTTTACAAGCATAATCTACCAGCTGGCTATCTTGACCAGTTTGGATGTGTTAATGATCAAAATGTGATGGCTGTAGAATTCAACAAGCAGCTTAAGGACAGAGTGATCAAGCTGAGGACAGAACTACCAGAGGCTGCAATTACTTATATCTGTTGTGGGTATCATGTGAATGACACCCATATATGGTGTGGGAATTTAGGAACCGCAAATGGGAAAGACGTGTTTGGCACTTCTTGTGAGAAGCCTTCAANGTATGTAAGCTGGGATGGTGTTCATTATGCTGAGGCTGCTAACCACTGGGTTGCTGATCGTATACTCAATGGCTCTTTCACAGACCCACCAACACCAATTACCCAAGCATGTTACAGGCATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01107	12733	15420	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001107s00036919.1	PF00657.17	Lipase_GDSL	34	338	7.10E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.628
SRR1783600	control	27.632
SRR1783602	moderate drought stress	27.553
SRR1811619	moderate drought stress	27.172

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.699
DRR006520	Root Summer glycyrrhizin high producing strain	39.601
DRR006521	Root Winter glycyrrhizin high producing strain	8.588
DRR006522	Root Winter glycyrrhizin high producing strain	7.757
DRR006523	Root Summer glycyrrhizin low producing strain	18.785
DRR006524	Root Summer glycyrrhizin low producing strain	19.005
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.940
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.204

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.114
SRR2868004	Drought Stress (root)	34.136
SRR2967015	Control (root)	46.970

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.636
SRR9715740	Leaf	15.381
SRR9715741	Leaf	15.716
SRR9715739	Root	14.710
SRR9715742	Root	26.864
SRR9715743	Root	21.219

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.094
SRR8749028	MeJA induced 9h	37.265
SRR8749029	MeJA induced 9h	13.315
SRR8749030	Uninduced	20.845
SRR8749031	Uninduced	7.525
SRR8749032	Uninduced	8.330

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.253
SRR8400027	Control - Root	39.170