Gene detail

Gene detail information of Glyur001105s00029444

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02990.1	7.00E-174	Mitochondrial transcription termination factor family protein
NR	XP_004516636.1	0	PREDICTED: uncharacterized protein LOC101489618 isoform X1 [Cicer arietinum]
trEMBL	tr\|V7B917\|V7B917_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW13353.1}

Sequence

Transcript Sequence

>Glyur001105s00029444.1
ATGTTTGTGAATTGTGATACCCTCTTGTTTCTGCAGATTCAATGGTACTCAACCCTTAGGGAAAATATGAAAGTTGTAACCTTTTCTGGTGGCATAACAAAACCCAGATTTTTGGTTGCCCAAACAGAAATGCCCGTCCTAACATTTGGTCATTCCAAGTTGACTGCTACCCTAGCTCTTCGGTTGCCATGTAATTGTGTTAGGAGGATGGGGTTGATTTCAAAGCTTCAGTGTTCTGTTGCTGATAGGACACTGACTTCTAGGTCNGGTGACTNGCCGGCATCCAAANCGGACTCNNGTCCNTTGCATAAGAGGCGGGGTGGTTCCTCATCGCTATATGTTCATCCTAGTTTATCTGAGATGAAGAAAGAAAAGGTGTCGATGCGTGAAANGGTTTATGAGTTCCTGCGGGGGATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGANCTTCCTGTGTCGGTCGATGTTATGAGGGAGCGCGTGGATTTTCTCCACAGCTTGGGGCTTACAATTGAAGACCTTAACAACTATCCTCTTGTTCTCGGCTGCAGCGTCAAGAAGAACATGGTTCCGGTGCTCGATTACCTCGGTAAGTTGGGAGTTAGGAAATCCACGATAACGCAGTTCTTGCGGAGATACCCGCAAGTGCTCCATGCTAGTGTGGTTGTGGATCTTGTACCGGTGGTNAAGTATCTTCAGGGGATGGATATCAAGCCCAATGATGTTCCTCNTGTTCTCGAGAGGTATCCCGAAGTGCTAGGATTCAAACTCGAGGGAACCATGAGCACGTCGGTTGCNTATTTGATTGGAATTGGTGTGGGAAGAAGAGAAATTGGAGGCGTCTTAACTAGATACCCTGAAATTTTGGGGATGCGGGTTGGTAGAGTCATCAAGCCTTTTGTGGAATATCTGGAAAGCTTTGGTATTCCAAGGCTAGCCATTGCTAGATTGATAGAGCAACGNCCTTATATTCTTGGGTTTGATCTGGACGAAAAGGTGAAGCCAAATGTGAAATCCCTTGAAGAGTTTAATGTTAGGCGAACATCACTTTCCTCTGTAATCGCTCAGTGTCCTGACATCATTGGAACTGACCTAAAGCCGAAACTTTCCGATAAGAGAAGTGTACTCAATTCTGTACTTGATTTGGATGCTGAGGAATTTGGCCTAATTGTTGAGAAGATGCCACAGGTAGTTAGCCTCANTAATAAACCTATGCTGAAGCATGTTGATTTTCTCAAGGATTGTGGATTTTCGTCGCAGCAAATGAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATCGACATCATGAAANTTAGCTTCGATTACTTCCAAATGGAGATGGAAAGGCCTTTGGAAGACTTGGTCACTTTCCCGGCATTCTTCACTTATAGCCTGGAGTCAACCATAAAACCTAGGCATAAGATGGTTTGCAAGAAAGGGTTGAAGTGTTCTCTGGCATGGATGCTTAACTGTTCTAATGAGAAATTTGAGCAACGAATGGACTATGACACTATCGACATGGAAGAGATGGAAATGGAACCATCATTTGACATGGATTCCTTGATGCAACCAAGGAATGATGAATCAGATTCTGATTACGAAGAAAGCGATTATGATAATGAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01105	86517	88157	-

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005739 mitochondrion

molecular_function
GO:0003690 double-stranded DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001105s00029444.1	PF02536.9	mTERF	157	503	5.50E-107

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.848
SRR1783600	control	6.810
SRR1783602	moderate drought stress	9.016
SRR1811619	moderate drought stress	8.857

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.222
DRR006520	Root Summer glycyrrhizin high producing strain	9.231
DRR006521	Root Winter glycyrrhizin high producing strain	7.917
DRR006522	Root Winter glycyrrhizin high producing strain	7.466
DRR006523	Root Summer glycyrrhizin low producing strain	13.943
DRR006524	Root Summer glycyrrhizin low producing strain	14.125
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.156
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.163

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.448
SRR2868004	Drought Stress (root)	15.480
SRR2967015	Control (root)	16.485

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.565
SRR9715740	Leaf	29.498
SRR9715741	Leaf	21.038
SRR9715739	Root	5.469
SRR9715742	Root	15.308
SRR9715743	Root	15.099

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.934
SRR8749028	MeJA induced 9h	6.495
SRR8749029	MeJA induced 9h	5.379
SRR8749030	Uninduced	2.298
SRR8749031	Uninduced	2.197
SRR8749032	Uninduced	1.546

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.033
SRR8400027	Control - Root	15.103