Gene detail

Gene detail information of Glyur001105s00029443

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54130.2	2.00E-163	Calcium-binding endonuclease/exonuclease/phosphatase family
NR	XP_006575391.1	0	PREDICTED: uncharacterized calcium-binding protein At1g02270-like isoform X2 [Glycine max]
Swissprot	tr\|O81916\|YC22_ARATH	8.00E-160	Uncharacterized calcium-binding protein At1g02270
trEMBL	tr\|I1JH84\|I1JH84_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G38700.1}

Sequence

Transcript Sequence

>Glyur001105s00029443.1
GTAGACTAAGAGAATTGAAAATAGATAGGAGGAGTTGTAAGATGAAGAATAGAAAATGGTAAGAATTTCAAGGACTGAAATTTATGCAATTGCCTCTTCAATGATTCAGGAAAACCGACAACAACAACCACCACCACCTTGCATTACCTGCACTACTTTTAACATTCTTGCTCCTATATACAAGCGCCTTAACCATGAGGACCAGAGTTGCCGTGAAAGTGAGTACAGAGGGTGTTGGTTGTCCAGGAATCACAGGATATTGGATTGGTTGTTGTATGAGAGATCTTCTATTATCTGTCTTCAGGAATTTTGGGTTGGAAACGAAGAGCTTGTTAATTTGTATGAGAAGAGACTTGGTGATGCTGGTTATATCAATTTCAAGCTTGGACGGACTAACAACCGTGGTGATGGTCTTCTGATAGCAGTGCAAAAGGAATATTTTACNGTTCTCAACTATAAGGAGTTGCAATTCAATGACTGTGGTGATCGAGTAGCTCAATTGTTACATGTTGCATTAGCTTTTCCTTGTCAAAACAGTGATATTAGGCAGGAAATGCTTATTGTCAACACTCACCTACTATTTCCTCATGATTCAAGTCTATGCCTTGTACGGCTGCATCAGGTATACAAGATACTTCAATATGTGGAATCTTATCAGAATGAATACCAACTTAAGCGTTTACCAATCATACTATGCGGTGACTGGAATGGAAGCAAAAGGGGACATGTTTACNAGTTCCTGAGGTCTCAGGGGTTTGTATCATCATATGATACTGCACATCAGTACACTGATGCAGATACTCACAAGTATCTATTGCGAAGAGCTTCACTGACAGAGAGTGATGCATTTGCTTTTCTAAAGGCTGATAATGAAGACTGTATTACCTATTCTGGTTTCTGTGAAGCANTTCGACAGCTTAATTTAATTGGTCATTGTCATGGGTTAAGTGTTGAAGAGACAAAGGACTTGTGGCTCCAAGCAGATATAGATGGAAATGGTGTACTTGATTATAAACAATTTCTGCAGCAAATCTGGAATCCAACAGGTTCAGATCAAAGAGATGACAATAAGAATTGGCAGCAGGGTGATGGGCCAAATGATAGTGAGGAGGATCAAACAATTGGTTTTAGTGTAAAAAATGCAGTTCTGTTCCCTCCAGAGGTGGAGAAAGGTAGATGGCCTGAAGACTACTCCCTTTCTGATCATGCAANACTAACTGTAGTCTTCTCACCTATAAGAATGTCATGTCATGCTCTCACATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01105	77312	81558	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001105s00029443.1	PF03372.18	Exo_endo_phos	34	249	5.20E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.232
SRR1783600	control	6.664
SRR1783602	moderate drought stress	6.570
SRR1811619	moderate drought stress	6.498

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.162
DRR006520	Root Summer glycyrrhizin high producing strain	5.034
DRR006521	Root Winter glycyrrhizin high producing strain	2.747
DRR006522	Root Winter glycyrrhizin high producing strain	2.821
DRR006523	Root Summer glycyrrhizin low producing strain	8.442
DRR006524	Root Summer glycyrrhizin low producing strain	8.740
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.908
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.509

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.117
SRR2868004	Drought Stress (root)	9.796
SRR2967015	Control (root)	12.144

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.523
SRR9715740	Leaf	45.323
SRR9715741	Leaf	47.905
SRR9715739	Root	0.350
SRR9715742	Root	7.481
SRR9715743	Root	6.342

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.285
SRR8749028	MeJA induced 9h	2.114
SRR8749029	MeJA induced 9h	2.301
SRR8749030	Uninduced	0.218
SRR8749031	Uninduced	0.237
SRR8749032	Uninduced	0.331

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.065
SRR8400027	Control - Root	11.327