Gene detail

Gene detail information of Glyur001105s00029438.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16700.1	3.00E-100	Alpha-helical ferredoxin
NR	XP_003636199.1	2.90E-156	NADH-quinone oxidoreductase subunit I [Medicago truncatula]
COG	YP_003550476.1	5.00E-91	NADH-quinone oxidoreductase subunit I [Candidatus Puniceispirillum marinum IMCC1322]
Swissprot	tr\|P80269\|NDUS8_SOLTU	2.00E-138	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial (Precursor)
trEMBL	tr\|G7ZVU9\|G7ZVU9_MEDTR	1.00E-156	Uncharacterized protein {ECO:0000313\|EMBL:AFK45741.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01105	39710	44175	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03941	NDUFS8	EC:1.6.5.3 1.6.99.3	Oxidative phosphorylation	map00190
			Oxidative phosphorylation	map00190
			Alzheimer's disease	map05010
			Alzheimer's disease	map05010
			Parkinson's disease	map05012
			Parkinson's disease	map05012
			Huntington's disease	map05016
			Huntington's disease	map05016
			Non-alcoholic fatty liver disease (NAFLD)	map04932
			Non-alcoholic fatty liver disease (NAFLD)	map04932

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component
GO:0016020 membrane

molecular_function

GO:0016651 oxidoreductase activity, acting on NAD(P)H

GO:0051536 iron-sulfur cluster binding

GO:0051539 4 iron, 4 sulfur cluster binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001105s00029438.2	PF12838.2	Fer4_7	138	192	2.80E-12

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	54.073
SRR1783600	control	55.866
SRR1783602	moderate drought stress	56.376
SRR1811619	moderate drought stress	59.689

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	72.430
DRR006520	Root Summer glycyrrhizin high producing strain	69.174
DRR006521	Root Winter glycyrrhizin high producing strain	69.146
DRR006522	Root Winter glycyrrhizin high producing strain	66.953
DRR006523	Root Summer glycyrrhizin low producing strain	65.634
DRR006524	Root Summer glycyrrhizin low producing strain	57.402
DRR006525	Leaf Summer glycyrrhizin high producing strain	49.053
DRR006526	Leaf Summer glycyrrhizin high producing strain	50.985

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	95.228
SRR2868004	Drought Stress (root)	90.883
SRR2967015	Control (root)	85.085

SRA Experiment	Description	TPM
SRR9715738	Leaf	66.573
SRR9715740	Leaf	69.577
SRR9715741	Leaf	63.795
SRR9715739	Root	22.693
SRR9715742	Root	42.906
SRR9715743	Root	36.991

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	141.413
SRR8749028	MeJA induced 9h	104.130
SRR8749029	MeJA induced 9h	143.752
SRR8749030	Uninduced	111.338
SRR8749031	Uninduced	94.547
SRR8749032	Uninduced	65.579

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	75.648
SRR8400027	Control - Root	77.892