Gene detail

Gene detail information of Glyur001105s00029436.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55830.1	5.00E-70	Concanavalin A-like lectin protein kinase family protein
NR	XP_007141356.1	0	hypothetical protein PHAVU_008G188700g [Phaseolus vulgaris]
COG	YP_003890765.1	3.00E-17	legume lectin beta domain-containing protein [Cyanothece sp. PCC 7822]
Swissprot	tr\|Q9LYX1\|LRK82_ARATH	3.00E-89	L-type lectin-domain containing receptor kinase VIII.2 (Precursor)
trEMBL	tr\|V7B6Z1\|V7B6Z1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW13350.1}

Sequence

Transcript Sequence

>Glyur001105s00029436.1
ATGGCTTCCATATGCCATATCTTCCTCCTAGTGTCATTCTTGCTCAATCTTCTTCAGCTAAAGACATATTCAATCAAAGTTCATTCACCTAATGATGTTCCAATCAATTTCTCAAACCAAAAGGGTTCTCTTCAAATCCCCAATGAATCACAAGACACAGATATAAGACACCAAGCAGGTAGAGGCATATATTCCTTCCCAATTAGGTTGTTAGATCCAAGAACAAAGGCCCCAGCTTCCTTTGAAACCACTTTCTCTTTTCAGCTCAACAATTTCACCACAAACTCTTCTGAGCAAGGGGGTAGTGGACTCACCTTCATCATTGTGCCTGATGAGTTCACAGTTGGAAGGCCAGGTCCATGGCTTGCAATGCTCAATGATGCTTGTGAGAATGACTACAAGGCAGTGGCAGTAGAATTTGACACAAGGAAGAATCCAGAGTTTGGAGATCCAAATGACAACCATGTTGGCATCAATTTAGGTACCATAGTATCCGCAAAAGTTGTCAATGTTTCTGATGTTGGAGTGTCCCTTAAGGATGGTTTTGTTCACCGTGCTTGGATCAATTATGATGGTCCACAAAGGAGAATGGAAATTCGTCTTGGACTTGCCAACCAAGAGGATTACCCTTCAAAGCCTATCTTCTCAGAGTCTTTGGATCTATCTCCTTATCTGAATGAGTACATGTTTGTTGGGTTCTCAGCTTCCACAGGTAACCATACTCAAATCCACAACATACTCTCTTGGAGCTTCACTTCAACAAGCCAAGCTTTTCTTCACTACCCTTCATCTGAAACCTGCCAAGGTAAAATCTTACTTGAGAATACCACAGAAATAGAAACAACAACTACTACTACAAAGAAGTCTTCTAGTAAGAATGAGACCCCACAAAGCTTTTTGATCTTTGTGGCTGCAGTGGCATTGGCTCTGGTTGTTTTACTTGGTTTTTACTTCATAAGTAGGCACAGAAGGAATGCTGCAAAATCAAACACTTCAGTGGAGGCAGAGAGGATTGATCAAAGGCCAAGGCCTCCGAACAAACCGCGCCGCTTTGCTTTCTCCGAACTCTCCTCTTCAACTAGATCCTACAGTGAGATAGAGTTGCTTGGGAGTGACTCAAGAGGAGTGTACTATAGAGGGAAGCTTCCCAATGGAAGCCAGGTAGCTGTGAAGAGATTCTCACCACAGTTTCTCAACACTCATGGATCGGATAGGAGGCGGTTGTTGAAGGAAATCAAAGCAATTATCCATGTTCGCCACCCGAATTTGCTCCTTGTAAGAGGATGGTGTCAGGACAACAATGAAGTCATGGTGGTTTATGACTTTGTCCCAAATGGTAGCCTTGATAAGTGGCTATTTGGTGCTGGTGTTCTTCCATGGACTAGGAGGTTCAAAGTGATCAAAGATGTAGCTGATGGATTGACCTTCTTACACCACACTAAGCAACTAGCACATAAGAACTTGAAGTGTAGCAGTGTGTTTCTTGATGTTAGCTTTAGAGCTGTTTTGGGGGATTTTGGGTTTGTGCTAATGGGAGCAGAATCAAAGATGTTTGAGTCAGTGGTGTGTGTAGGTGCTGATGTGTTTGAGTTTGGTGTACTTGTGTTGGAAGTGATAGCTGGAAGACCAAGGATTGAGAAGAATGAAGAAGGGGAAGAGGAAGGGAAGGCTGAAGAGAGGAACTTGTTGGATTTTGCTTGGAACTTGCATGAGACTAATGAGAAAGTGAGGCTTGTGGATAGAAGGATGGGGTCATTGATCAACTTGGAGCAAGCAATTCGTGTGCTTGAAATTGGGTTGCTTTGTACTTTGAATGAGAATAAAGGAAGACCCTCTATGGAGCAAGTGGTGGAGTTTCTTGGTAACATGGAGAAGCCTATTCCTGAGCTTCCAAGGACTCGACCTGCCATTAATGTGGCTGCAAAACGTTGGGGCCTGGATATATCTCTTCCTAGTGGAGTGAGGGATGCTATGGAGAAAGCAGAACGAAAAAAGAGAGCCCAAATTCTTGAGTCTGAAGGTGATCAAGTTATGATTTCAATTCTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01105	25766	30311	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001105s00029436.1	PF00139.14	Lectin_legB	40	252	6.20E-54
Glyur001105s00029436.1	PF00069.20	Pkinase	365	521	1.50E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	129.062
SRR1783600	control	127.869
SRR1783602	moderate drought stress	56.612
SRR1811619	moderate drought stress	56.670

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.319
DRR006520	Root Summer glycyrrhizin high producing strain	25.554
DRR006521	Root Winter glycyrrhizin high producing strain	33.258
DRR006522	Root Winter glycyrrhizin high producing strain	32.510
DRR006523	Root Summer glycyrrhizin low producing strain	62.392
DRR006524	Root Summer glycyrrhizin low producing strain	62.316
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.582
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.767

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.838
SRR2868004	Drought Stress (root)	34.246
SRR2967015	Control (root)	34.740

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.058
SRR9715740	Leaf	22.068
SRR9715741	Leaf	18.449
SRR9715739	Root	40.033
SRR9715742	Root	58.609
SRR9715743	Root	48.573

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.767
SRR8749028	MeJA induced 9h	0.606
SRR8749029	MeJA induced 9h	0.457
SRR8749030	Uninduced	0.168
SRR8749031	Uninduced	0.214
SRR8749032	Uninduced	0.046

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	89.046
SRR8400027	Control - Root	90.727