Gene detail information of Glyur001104s00026652 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G06850.1 | 9.00E-19 | xyloglucan endotransglucosylase/hydrolase 4 |
| NR | XP_008232877.1 | 7.45E-108 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 27 [Prunus mume] |
| COG | NP_391786.1 | 6.00E-20 | beta-glucanase [Bacillus subtilis subsp. subtilis str. 168] |
| Swissprot | tr|Q8LDS2|XTH27_ARATH | 2.00E-27 | Probable xyloglucan endotransglucosylase/hydrolase protein 27 (Precursor) |
| trEMBL | tr|M5X4R2|M5X4R2_PRUPE | 2.00E-107 | Uncharacterized protein {ECO:0000313|EMBL:EMJ21042.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01104 | 9259 | 11432 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001104s00026652.1 | PF00722.16 | Glyco_hydro_16 | 30 | 183 | 5.50E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.339 |
| SRR1783600 | control | 18.350 |
| SRR1783602 | moderate drought stress | 21.228 |
| SRR1811619 | moderate drought stress | 21.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.394 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.977 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.204 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.349 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.322 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.323 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.518 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.368 |
| SRR2868004 | Drought Stress (root) | 11.302 |
| SRR2967015 | Control (root) | 13.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.990 |
| SRR9715740 | Leaf | 0.955 |
| SRR9715741 | Leaf | 0.951 |
| SRR9715739 | Root | 15.992 |
| SRR9715742 | Root | 10.597 |
| SRR9715743 | Root | 8.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.799 |
| SRR8749028 | MeJA induced 9h | 3.355 |
| SRR8749029 | MeJA induced 9h | 3.585 |
| SRR8749030 | Uninduced | 0.911 |
| SRR8749031 | Uninduced | 0.076 |
| SRR8749032 | Uninduced | 1.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.551 |
| SRR8400027 | Control - Root | 10.339 |