Gene detail information of Glyur001103s00034494 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29920.1 | 8.00E-161 | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein |
| NR | XP_007138765.1 | 0 | hypothetical protein PHAVU_009G235300g [Phaseolus vulgaris] |
| trEMBL | tr|V7AYX8|V7AYX8_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW10759.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01103 | 55832 | 61164 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001103s00034494.1 | PF02861.15 | Clp_N | 26 | 46 | 0.27 |
| Glyur001103s00034494.1 | PF02861.15 | Clp_N | 144 | 179 | 2.6 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.569 |
| SRR1783600 | control | 8.584 |
| SRR1783602 | moderate drought stress | 9.696 |
| SRR1811619 | moderate drought stress | 9.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.258 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.230 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.126 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.092 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.920 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.919 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.582 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 33.671 |
| SRR2868004 | Drought Stress (root) | 42.520 |
| SRR2967015 | Control (root) | 61.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.499 |
| SRR9715740 | Leaf | 0.107 |
| SRR9715741 | Leaf | 0.513 |
| SRR9715739 | Root | 0.306 |
| SRR9715742 | Root | 6.719 |
| SRR9715743 | Root | 5.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.538 |
| SRR8749028 | MeJA induced 9h | 0.019 |
| SRR8749029 | MeJA induced 9h | 0.344 |
| SRR8749030 | Uninduced | 0.036 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.583 |
| SRR8400027 | Control - Root | 24.400 |