Gene detail

Gene detail information of Glyur001102s00033857

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72860.1	6.00E-49	Disease resistance protein (TIR-NBS-LRR class) family
NR	XP_003613569.1	4.42E-172	Disease resistance-like protein [Medicago truncatula]
Swissprot	tr\|Q40392\|TMVRN_NICGU	4.00E-60	TMV resistance protein N
trEMBL	tr\|G7K9Q6\|G7K9Q6_MEDTR	2.00E-172	Disease resistance protein {ECO:0000313\|EMBL:AES96527.2}

Sequence

Transcript Sequence

>Glyur001102s00033857.1
ATGGATCTGCCATCACTCTCTTCTTCTTGTTCCTCCTTTTCCTATGGATTCACCTACAACGTGTTCCTTAGTTTCAGAGGCTCCGACACTCGCTACCATTTTACTGGCAATCTCTACAAAGCTCTTTCTGACAAGGGAATCCATACCTTCTTTGATGACGGAGAGCTTAAGGGAGGGGATGAAATTAAACCATCACTTGTCAAGGCAATTAAGGAGTCCAGGATTGTCATTCCCGTGTTCTCTGAAAACTATGCTTCTTCTTCATTCTGCTTGGACGAACTTGTCACCATCAATGAGTGCGTCAAGGCAAAGGGCGTGGATCCTTCTCACGTGCGACATCTGACTGGGAGCTATGGCCAAACAATTGCTAAGCATGAAGAGAGATTCAGAAATAACAAGGAACGGTGCACAGATAACATGGAGAGGTTGCAAAGGTGGAAGATGGCTCTTACCCAAGTAGCTGACTTGTCTGGCAAACATTTCATTCATGGCAGGAAAGAATATGAGCACCAATTTATTGGGAAGATAGTTGAAGAGGTCTCCAAAAAGATCAATCGTGCGCCTTTACATGTTGCGAATTATCCAGTAGGACTGCAGTCTCGAGTGCTACAAGTAAATTTGCAACTTGAAGTTGGATCTGACGATGCAGTCCACATGATAGGGATATATGGAATTGGTGGGATGGAAATGCTCCTATCCGAAACAACTGGGTTGAGCATTAAGGTAGGAGATGTCAGTGAAGGAATTTCAATCATAAAGCAAAGGCTGCATCGAAAGAAGATTCTTTTGGTTCTTGATGATGTTGACAAATTGAAGCAGCTGCAGGTTATGGTTGGAGAACCTCATTGGCTTGGTCCTGGCAGTAGAGTCATCATTACCACTCGAGACAAACATTTGCTAACAAGTCATAGAATTGAAAGAACATATGAGGTACATGGGTTAGATATGGAAGAAGCTCTTGAATTGTTGAGATCTATGTTGGATATGTATGAGAGAATTCCAAATGAAGATATCCAAAATATACTTAAAGAAGAAGAGAAAAATGTTTTTCTCGACATTGCTTGTTGTTTTAAAGGAAGTAATCTGGAAGAGGTCAAAGAAATACTTTGTGCTCATCATGGTCATAGCATTAAATATCACCTTGGGGTGTTGGTTGAAAAATCTCTCATAAAGATTAGAACACCTGGTTACGTGACATTACATGACTTGATAGAGGACATGGGTAAAGAAATTGTCCGACAAGAATCGCCAAAAGAACCTGGGAAACGCAGTAGGTTGTGGTTCCATGCAGACGAACCGCATGAGGCTGGAAGCCCCCAGCTCCGTTTGTCTGGAACTGCAATGATTCCGGAGTGGTTCGAGCACCAAAGCAGAGGAACTTCGATTTCTTTCTGGTTTCGTAACAAATTCCCTTCCGTGGATCTCTTCCTTGTCTGTAAATCGATGGATAACCCCGACAATAAATTTCACATATTTCGAATTAAACTGATCATCAACGGCCGTGAATATGATGTTTGGGGCCCAGAGGATTTTTATGGTTCGCGTTTCCATCTCAATATCAAAACGGATCATACATATGTATTTGATTTGATGCCGTGTCCCTGGGATTCCGAATATGAAGATTTGATGCCGTTTCTGAAGCCGAAATATAAACTGGACGAAGCACTTTTGAAAAATGAATGGATCCATGTGGAGGTTAAGTTGATGGACTTTTGGAGGGAGAGATCACCAATTATAGAAAGTGGAATCCATGTATACAAACAGAAAAGTAACATGGAGGATATTCGATTCACCAATCCTTTTAAAAAGAGAAAATTAGATGATGATGATGACATGATGATGCTGACGAAGAAGCTGAAGATGATGACTATTCACAATACTGCAGAACTTTAGATCAATCACTAAACCACTCGCTGGTGAGAAAGCATGGATTCATGGGCATGCTAGTTTTTGACACAANTTTTGCAATAGCAACAATGAATACTGGATTCATTGTTGTGGATGTGAATTATGCATTCAAGTTTCAATAAAAGATAACAGGCTTAAAGCAAGGGCAAGGGCTTGGACTGCAGGTTTTTGGTTGCTGATTTACTCTGTGATTATTACTTTTCGTCTTATCAACTATTCTACTACTATCATTATAAACTCATCAATTTGTGTGTGTGCAGTCAATTATCATTCAGTGTTTGGAAGGACTTTAGTTTATGCATACCTTACGAATAAGTGAATAATATATGGTCAATGCAACATATTTCAAAAGGGCATAAAGTTTTTTAAACTTTAGCATGTAAGATTTATATCAAATTTCAAAAGGGCAGGCATAAGACTTTCTTAAGCTTGGTTTTTTTTTTTTACATAAATTTCTTGAATATAGAGTCCAATGAGAAGAGAAAAATAAAAAGTGGGAGGGGGAGTTTAATAAAAATATTAGTAGACATATATACATTTTTTTTAAAAGCTTATTTTGGTAAATAATGTAAGTAGGTTTCTATACAGGGGCAAAGAGATAGACTATATAACAGCTGGGGAAGAAGAAAGAAGCTTGACATGGACCATGGTTTCAAATTGCAGATGCAGTCAAAGTCACAGCCAATGCAAATGCGAGTGTTATAGCATATGTATTGCAGTCATTGTAGTGTGATGTTATTTTATATTTATATTGTTGCGGTCATTGCACTCGTTGCATTGTGGCCAACTGTTATGTGATTTAGTTGNAAATACTACCACAACCTCAGTATTGTGGCTGCATTACATGATGTGATCAGTAATTTTGAATCCATGACATAGACATTAATTTATGCACATGCTCATTAGATTTCATTTCAGCTCTTTTCAGTATTTCTCATTATTTATGGTAGGTATCAGCTTAAAATATGCTAGTGATGCAGGCCAGTGAATTAATTAATTTAACCAAGTTCAGATCATCAAATCAAATGAGAATTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01102	58667	64444	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001102s00033857.1	PF01582.15	TIR	21	151	1.20E-25
Glyur001102s00033857.1	PF00931.17	NB-ARC	246	343	3.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.419
SRR1783600	control	0.365
SRR1783602	moderate drought stress	0.781
SRR1811619	moderate drought stress	0.791

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.445
DRR006520	Root Summer glycyrrhizin high producing strain	12.374
DRR006521	Root Winter glycyrrhizin high producing strain	0.095
DRR006522	Root Winter glycyrrhizin high producing strain	0.110
DRR006523	Root Summer glycyrrhizin low producing strain	9.926
DRR006524	Root Summer glycyrrhizin low producing strain	9.759
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.225
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.192

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.395
SRR2868004	Drought Stress (root)	0.425
SRR2967015	Control (root)	0.579

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.914
SRR9715740	Leaf	19.436
SRR9715741	Leaf	29.345
SRR9715739	Root	5.916
SRR9715742	Root	30.156
SRR9715743	Root	27.597

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.664
SRR8749028	MeJA induced 9h	8.759
SRR8749029	MeJA induced 9h	11.396
SRR8749030	Uninduced	6.725
SRR8749031	Uninduced	7.274
SRR8749032	Uninduced	4.554

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.965
SRR8400027	Control - Root	12.349