Gene detail information of Glyur001102s00033854 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52545.1 | 1.00E-16 | |
| NR | XP_006599554.1 | 1.68E-92 | PREDICTED: probable RNA-binding protein 18-like [Glycine max] |
| COG | YP_004370109.1 | 9.00E-10 | RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM 11109] |
| Swissprot | tr|O04319|PABP6_ARATH | 1.00E-10 | Polyadenylate-binding protein 6 |
| trEMBL | tr|K7LDN0|K7LDN0_SOYBN | 6.00E-93 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G24660.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01102 | 35347 | 38344 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001102s00033854.1 | PF00076.17 | RRM_1 | 15 | 87 | 3.40E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.914 |
| SRR1783600 | control | 2.924 |
| SRR1783602 | moderate drought stress | 4.345 |
| SRR1811619 | moderate drought stress | 4.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.423 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.499 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.206 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.468 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.721 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.593 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.680 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.798 |
| SRR2868004 | Drought Stress (root) | 13.829 |
| SRR2967015 | Control (root) | 12.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.029 |
| SRR9715740 | Leaf | 16.744 |
| SRR9715741 | Leaf | 13.673 |
| SRR9715739 | Root | 3.798 |
| SRR9715742 | Root | 4.572 |
| SRR9715743 | Root | 5.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.653 |
| SRR8749028 | MeJA induced 9h | 14.945 |
| SRR8749029 | MeJA induced 9h | 27.837 |
| SRR8749030 | Uninduced | 17.070 |
| SRR8749031 | Uninduced | 21.749 |
| SRR8749032 | Uninduced | 36.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.725 |
| SRR8400027 | Control - Root | 12.313 |