Gene detail

Gene detail information of Glyur001102s00033853

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G52540.1	4.00E-105	Protein of unknown function (DUF819)
NR	KEH26224.1	0	integral membrane protein, putative [Medicago truncatula]
COG	YP_003527497.1	7.00E-64	hypothetical protein Nhal_2003 [Nitrosococcus halophilus Nc 4]
Swissprot	tr\|Q7XNX6\|SUS7_ORYSJ	3.00E-15	Sucrose synthase 7
trEMBL	tr\|A0A072U8V4\|A0A072U8V4_MEDTR	0	Integral membrane protein, putative {ECO:0000313\|EMBL:KEH26224.1}

Sequence

Transcript Sequence

>Glyur001102s00033853.1
ATGGCTGTCTTCAGGTTACCGTCTGTCACTGTCCCCTCTCCGTCACAGCCAATGCCATCCCGCCACCTGTCACCCCAACATTCTCTCCTNAGGAGGTTCAACAACTCATTTCCACCGCTGCTACGTCAAATTAGCACGACCACGCCGCCAACAACGCTGTCGTCGACGACGTCGTTTTTCTCGAAGGGACCTCGTTCGAGTNGAAGCGTTAATGTTGCGGTGAGGTCACAGCTGAGATACCCTATGGTATCCCCCAATGACCACTGGGGCATTTGGTCCACTCTCTTCGCCACTGGCGCCTTTGGTCTCTGGTCGGAGAAGACTAAAATTGGGAGCATGGTAAGTGGAGCACTGGTGAGCACGTTGGTTGGGCTTGCAGCAAGCAATCTGGGAATTCTTCCGCATGACGCGCCTGCGTATTCTGTNGTCTTGGAGTTCCTGCTTCCCTTAACCATTCCTTTGCTACTCTTTGGAGCAAACTTGCACCAAGTGGTGCGTTCAACTGGGACACTACTNTTAGCTTTCTTACTTGGCTCAGTTGCTACTATCGTTGGCACTCTAGTGGCATTTCTTTTAGTGCCTATGCGATCTCTTGGTCCTGACAACTGGAAAATTGCAGCTGCACTCATGGCTGTTAACTATGTTGCCATTTCAGAGGCACTTGGTATGTCTGCATCAGTTTTAGCAGCAGGAGTTGCAGCAGATAATGTTATCTGTGCTTTATATTTTGTGGTGTTGTTTGCATTGGCTTCTAAAATACCTGCTGAGGCTGCAATCCCAACCACAGCTGCTACATACTTAACAAAACTAACTGGGATCCAAGGAGGAACCCTCCCAGGAGTAACTGCAGTCATAGTCATTTTAGCCACTCTTCTCCCAAAGCAGATTGGTCCCCTTGTACCTGCTGGCCACACTGTTGCCCTGGTTTTGATGCAGGTATTTTTTGTGGTGGTTGGAGCTAGTGGGAGTATATGGAATGTGATCAGGACTGCCCCAAGTATTTTCATGTTTGCACTAGTTCAAGTAACCATCCATCTTCTTCTCGTTCTTGGATTAGGGAAGCTGTTTAAGTTGGACTTGAAGCTATTGCTTTTAGCATCAAATGCCAACATTGGGGGCCCTACAACAGCCTGTGGGATGGCCAAGGCCAAAGGCTGGGAATCTCTAGTTGTTCCTGGAATTCTTACAGGCATCTTTGGGGTTGCAATTGCAACATTTTTAGGTATTGGTTTTGGAATGGAACTTTATAGTAATAATATAACTGGGAAAATCCCAGACGAGCTTGGAAATTTGACAAGAGGCAGCTGTTGTTCCTCATTTCCACCATATGTTGCTTTTGTAGTGAGGCCTAATCCTGGCTTTTGGGAATTTGTTAAAGTGAATGCAGATGATTTGCAAGTAGATGGTATTGAGGCTTCAGAATACTTGAAATATAAGGAAATGGTGTTTGATGAGAAGTGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01102	22115	33800	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005985 sucrose metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001102s00033853.1	PF05684.7	DUF819	94	253	9.20E-50
Glyur001102s00033853.1	PF05684.7	DUF819	259	415	9.20E-49
Glyur001102s00033853.1	PF00862.14	Sucrose_synth	440	484	7.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.377
SRR1783600	control	1.381
SRR1783602	moderate drought stress	1.504
SRR1811619	moderate drought stress	1.506

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.005
DRR006520	Root Summer glycyrrhizin high producing strain	0.902
DRR006521	Root Winter glycyrrhizin high producing strain	0.091
DRR006522	Root Winter glycyrrhizin high producing strain	0.202
DRR006523	Root Summer glycyrrhizin low producing strain	0.538
DRR006524	Root Summer glycyrrhizin low producing strain	0.672
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.227
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.141

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.255
SRR2868004	Drought Stress (root)	1.430
SRR2967015	Control (root)	0.871

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.461
SRR9715740	Leaf	1.634
SRR9715741	Leaf	2.509
SRR9715739	Root	0.919
SRR9715742	Root	0.809
SRR9715743	Root	0.549

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.118
SRR8749028	MeJA induced 9h	1.394
SRR8749029	MeJA induced 9h	2.184
SRR8749030	Uninduced	0.804
SRR8749031	Uninduced	0.545
SRR8749032	Uninduced	0.713

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.329
SRR8400027	Control - Root	2.006