Gene detail

Gene detail information of Glyur001101s00022438

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G42560.1	8.00E-75	Abscisic acid-responsive (TB2/DP1, HVA22) family protein
NR	XP_003527662.1	1.50E-156	PREDICTED: HVA22-like protein i-like [Glycine max]
Swissprot	tr\|Q8LE10\|HA22I_ARATH	3.00E-108	HVA22-like protein i
trEMBL	tr\|I1K7K3\|I1K7K3_SOYBN	6.00E-157	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G02750.1}

Sequence

Transcript Sequence

>Glyur001101s00022438.1
GAAACTAGAAAACACATAAAGTTAAGTTACGAGTTTGTAANATTGATACAAACTGGAAAACACATATAGTTAAGGCCACAGTGAGCCCAAATCCGTGGTTAAATTTGGGTCGGGTCGGGTCAACAAGTAAATGGAGTGGATTGAAGAGAAAAGTATCCAGTATCCACCACCACCGTCCGTCCAGCAAATAGCAATAGCAATAGCAATAGCAATAGCAATAGCAATCGGAATACAGATCGAAGCAACAAAACACAAAATTTAAAAAGGGCTCCATTTTCCAAGTTCTGTAGCATTTGTGTGTGGCATCTTTCTTTGTTTCTCTATAGTCTATTGTAACTTGTAGGAGTAATCTCTACTCAACTCTATACTACTAGGATAGGATAGATATAGATATTAGATTATNTATATTTCCAATTCTCACTCTCTTTGCGACAACGTAACTAACGGCTCGCGGTGCCGCTGATTTCCCTCTATGCCGGCGCTCAACTGAACCTGCAACCAAACACCTCTCCCTCATTACGCTAACCAGGGATACAAAATGATTGGATCCTTTCTTACCAGGGCACTTGTGATGGTTTTTGGCTATGCCTACCCGGCATATGAATGCTATAAAGCAGTTGAAAAGAATAAGCCGGAAATTGAACAACTTCGCTTTTGGTGCCAGTATTGGATTTTGGTGGCTATTTTGACAGTATGCGAGCGAATTGGTGATACGTTTATATCATGGGTTCCAATGTATAGTGAAGCTAAGTTGGCTTTTTTTATATATCTGTGGTACCCAAAAACAAAGGGAACAACATATGTGTATGATTCCTTCTTTAGACCATATGTTGCAAAACATGAGACGGAAATTGATCGCAACTTGTTGGAACTAAGGACAAGGGCTGGAGATATTGCAGTTTCGTATTGGCAAAAAGCTGCTAGTTATGGCCAGACTAGAGTATTTGACATTTTGCAGTATGTTGCTGCCCAATCAACACCTACGCCTCGCCCTGCTCAGCAAAGACAGGCTGTGAGGGTCCGCCAGCCTGCACCTGGTAATAGCCAACATGCTGCTGCAACAGCACCACAAGCTGAGATTCCACCTTCTCCTACTTCTAGCTCATCTTCAAGTGAGCACCAGAAGGAAGTAAAAGAGGAGTTATGTTCTTCACAAGTACCTAAAGCAGCCTCCACTTTAGCAGGTTCAAGTACTCAGAAGTCTGACCCTACCCCTGAATCCACAAACCAATCCGCACCCACAGAGGCAGAGCCAATGCAGGTTGAAGCAGCACCCCCTTCTGCAAATGAAAATGAAAACCCTCCTTCAAATGAAACAATAATGGAAGAGAGCATTAGGGTTACACGAGGCAGACTAAGATCTCGATCAGCAGGAATCCGTTAGGGCTCCCATTGTTTTCAATTTTTAGCCTGAAAAGTAGGGTTACGTGGACTATGATGGGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01101	87440	90184	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001101s00022438.1	PF03134.14	TB2_DP1_HVA22	5	98	1.10E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.857
SRR1783600	control	10.000
SRR1783602	moderate drought stress	13.484
SRR1811619	moderate drought stress	13.399

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.191
DRR006520	Root Summer glycyrrhizin high producing strain	11.062
DRR006521	Root Winter glycyrrhizin high producing strain	17.376
DRR006522	Root Winter glycyrrhizin high producing strain	16.846
DRR006523	Root Summer glycyrrhizin low producing strain	15.198
DRR006524	Root Summer glycyrrhizin low producing strain	15.455
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.606
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.738

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.635
SRR2868004	Drought Stress (root)	26.409
SRR2967015	Control (root)	33.224

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.563
SRR9715740	Leaf	15.368
SRR9715741	Leaf	12.823
SRR9715739	Root	7.532
SRR9715742	Root	8.591
SRR9715743	Root	8.572

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.229
SRR8749028	MeJA induced 9h	41.724
SRR8749029	MeJA induced 9h	51.249
SRR8749030	Uninduced	55.118
SRR8749031	Uninduced	40.722
SRR8749032	Uninduced	51.563

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.844
SRR8400027	Control - Root	18.058