Gene detail information of Glyur001101s00022432 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75750.2 | 4.00E-24 | GAST1 protein homolog 1 |
| NR | XP_003603759.1 | 4.57E-49 | Gibberellin-regulated protein [Medicago truncatula] |
| Swissprot | tr|Q93X17|SNAK2_SOLTU | 5.00E-36 | Snakin-2 (Precursor) |
| trEMBL | tr|G7J582|G7J582_MEDTR | 2.00E-49 | Gibberellin-regulated family protein {ECO:0000313|EMBL:AES74010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01101 | 64027 | 65388 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001101s00022432.1 | PF02704.9 | GASA | 43 | 102 | 1.50E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 75.849 |
| SRR1783600 | control | 76.083 |
| SRR1783602 | moderate drought stress | 53.099 |
| SRR1811619 | moderate drought stress | 52.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 161.754 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 159.304 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.017 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.681 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 641.407 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 639.027 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.840 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.151 |
| SRR2868004 | Drought Stress (root) | 13.618 |
| SRR2967015 | Control (root) | 13.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.265 |
| SRR9715740 | Leaf | 24.675 |
| SRR9715741 | Leaf | 35.913 |
| SRR9715739 | Root | 20.805 |
| SRR9715742 | Root | 102.232 |
| SRR9715743 | Root | 82.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.072 |
| SRR8749030 | Uninduced | 0.030 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.434 |
| SRR8400027 | Control - Root | 26.384 |