Gene detail

Gene detail information of Glyur001101s00022425

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G75780.1	tubulin beta-1 chain
NR	XP_003603765.1	Tubulin beta chain [Medicago truncatula]
Swissprot	tr\|Q39445\|TBB_CICAR	Tubulin beta chain
trEMBL	tr\|G7J588\|G7J588_MEDTR	Uncharacterized protein {ECO:0000313\|EMBL:AFK44706.1}

Sequence

Transcript Sequence

>Glyur001101s00022425.1
GCGGAAACGATTTTTACTAGATAAAACCATATGATTGGGCAATGCGTCATTAAGAAATGCACCGAAATATATGCAATCATGCAATGGGCAANAACGTAAAAGGAAGTAGAGAAAGGTGGGGGCCTCAGGGATAACATGATCGAAGTTATGCGCTGGTTATAGTTGGTACAGCTCGTGCCCGTAACATGGCTGTCACCCTTCAACAACGAACGGCACAGGACACTGCACTCCTAAACAAAATATCCCGCCCTCCANTATTACCATCCTAACCTCCGATTTTCCCTCCCTCTCCCCTTTCTCTCTCTATCTCCGATCCCCACCTCCATAAATGTGTCCACTCCCTCGATTCTAACCGCTTGATCGATTCTCATTCTCATTCTCATTTCCCCAACTCCATCACCAAACCCTAAATCTCATCCTCCATTCTCTCTATCGCTCGNAACCATGAGAGAGATCTTGCACGTGCAAGGAGGCCAATGTGGCAACCAAATCGGGTCCAAGTTCTGGGAGGTGATCTGCGACGAGCACGGCATCGATCCAACCGGAAAGTACGTTAGCCAAGGCGGAAACGAGGTCCAACTCGAGAGGATCAATGTGTATTACAATGAGGCTTCCGGTGGAAGGTATGTTCCTAGGGCGGTGCTCATGGATCTTGAACCTGGCACCATGGATAGCATCAGATCTGGCCCTTACGGCAAGATCTTTCGACCTGATAACTTCGTCTTTGGCCAGTCCGGTGCCGGTAATAATTGGGCCAAAGGTCACTATACCGAAGGTGCCGAGTTGATCGACGCCGTTCTTGATGTGGTTCGCAAAGAAGCCGAAAACTGTGATTGCTTGCAAGGTTTTCAAGTTTGCCACTCACTCGGAGGAGGCACGGGTTCTGGTATGGGAACGCTGTTGATATCAAAGATTAGGGAGGAATACCCAGACAGAATGATGCTCACATTCTCTGTTTTCCCATCTCCAAAGGTGTCTGACACAGTTGTAGAGCCCTACAATGCCACTTTATCTGTACACCAACTGGTAGAAAATGCGGATGAGTGCATGGTCCTTGACAATGAAGCGCTTTATGACATTTGCTTCAGGACATTAAAACTCAGCACCCCTAGCTTTGGTGATCTGAACCATCTGATTTCTGCAACNATGAGTGGGGTTACCTGTTGTCTGAGGTTCCCTGGACAGCTGAACTCTGACCTCAGGAAGCTGGCTGTCAATCTGATCCCATTTCCACGTCTTCACTTCTTCATGGTGGGGTTTGCACCTCTCACTTCTCGTGGGTCTCAGCAGTATGTCTCCCTTACTGTCCCAGAACTGACTCAACAAATGTGGGACGCCAAAAATATGATGTGTGCTGCTGATCCCCGACATGGTCGATACTTGACTGCATCTGCAATGTTCAGGGGAAAAATGAGCACCAAAGAGGTGGATGAACAAATGATCAATGTGCAGAACAAGAATTCATCATACTTTGTTGAATGGATCCCCAACAATGTGAAGTCCAGCGTGTGTGATATTCCACCCAGGAATTTGAGGATGTCATCCACCTTTATTGGGAACTCAACTTCAATTCAGGAGATGTTTAGGAGGGTGAGTGAGCAATTCACTGCAATGTACAGGCGCAAGGCCTTCTTGCACTGGTACACTGGGGANGGGATGGACGAGATGGAGTTCACAGAGGCAGAGAGTAACATGAATGATTTGGTAGCAGAGTACCAGCAATACCAGGACGCAACNGCGGAGGAGGAGGATGAGTATGAAGAAGAGGGTGACGAACATTATGAAGAGCAGTAGCTGGATCAAACTCGGTTTATCAAATGCTTCTTTTTCTAGTTCCCGATCATCTTGTTGGGAATCTGTGCTGTCTTGAGCTGCTTCAAATTNATCGAAGGTAGCAAATGATGGGTGGAGACGGTGAAGTTAAAGAGGAGAAAGATTGGTATTTTGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01101	32278	37352	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007017 microtubule-based process

GO:0051258 protein polymerization

cellular_component

GO:0005874 microtubule

GO:0043234 protein complex

molecular_function

GO:0003924 GTPase activity

GO:0005200 structural constituent of cytoskeleton

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001101s00022425.1	PF00091.20	Tubulin	3	224	7.20E-72
Glyur001101s00022425.1	PF03953.12	Tubulin_C	263	384	6.20E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	163.900
SRR1783600	control	161.327
SRR1783602	moderate drought stress	47.291
SRR1811619	moderate drought stress	47.197

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	104.052
DRR006520	Root Summer glycyrrhizin high producing strain	101.523
DRR006521	Root Winter glycyrrhizin high producing strain	20.913
DRR006522	Root Winter glycyrrhizin high producing strain	20.551
DRR006523	Root Summer glycyrrhizin low producing strain	43.142
DRR006524	Root Summer glycyrrhizin low producing strain	42.539
DRR006525	Leaf Summer glycyrrhizin high producing strain	88.319
DRR006526	Leaf Summer glycyrrhizin high producing strain	88.661

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	105.126
SRR2868004	Drought Stress (root)	43.127
SRR2967015	Control (root)	52.643

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.372
SRR9715740	Leaf	12.474
SRR9715741	Leaf	11.432
SRR9715739	Root	66.541
SRR9715742	Root	43.262
SRR9715743	Root	41.421

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	54.104
SRR8749028	MeJA induced 9h	46.809
SRR8749029	MeJA induced 9h	37.390
SRR8749030	Uninduced	8.377
SRR8749031	Uninduced	2.943
SRR8749032	Uninduced	7.296

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	88.195
SRR8400027	Control - Root	95.654