Gene detail information of Glyur001101s00022421 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75800.1 | 3.00E-105 | Pathogenesis-related thaumatin superfamily protein |
| NR | XP_004500935.1 | 0 | PREDICTED: thaumatin-like protein 1-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|P83332|TLP1_PRUPE | 3.00E-83 | Thaumatin-like protein 1 (Precursor) |
| trEMBL | tr|V7AR04|V7AR04_PHAVU | 2.00E-169 | Uncharacterized protein {ECO:0000313|EMBL:ESW08092.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01101 | 14991 | 20815 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001101s00022421.1 | PF00314.12 | Thaumatin | 19 | 133 | 2.70E-39 |
| Glyur001101s00022421.1 | PF00314.12 | Thaumatin | 141 | 358 | 5.30E-90 |
| Glyur001101s00022421.2 | PF00314.12 | Thaumatin | 19 | 133 | 2.70E-39 |
| Glyur001101s00022421.2 | PF00314.12 | Thaumatin | 141 | 358 | 5.30E-90 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.681 |
| SRR1783600 | control | 26.056 |
| SRR1783602 | moderate drought stress | 27.037 |
| SRR1811619 | moderate drought stress | 26.919 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 64.238 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 62.627 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.010 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.852 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.308 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.368 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.938 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 35.952 |
| SRR2868004 | Drought Stress (root) | 29.956 |
| SRR2967015 | Control (root) | 35.843 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.592 |
| SRR9715740 | Leaf | 13.892 |
| SRR9715741 | Leaf | 8.640 |
| SRR9715739 | Root | 68.010 |
| SRR9715742 | Root | 40.886 |
| SRR9715743 | Root | 48.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.933 |
| SRR8749028 | MeJA induced 9h | 9.234 |
| SRR8749029 | MeJA induced 9h | 11.051 |
| SRR8749030 | Uninduced | 0.582 |
| SRR8749031 | Uninduced | 0.354 |
| SRR8749032 | Uninduced | 1.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.894 |
| SRR8400027 | Control - Root | 39.786 |