Gene detail

Gene detail information of Glyur001100s00028608

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47060.1	0	FTSH protease 7
NR	XP_004490581.1	0	PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Cicer arietinum]
COG	YP_007091473.1	7.00E-149	membrane protease FtsH catalytic subunit [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q9FIM2\|FTSH9_ARATH	0	ATP-dependent zinc metalloprotease FTSH 9, chloroplastic (Precursor)
trEMBL	tr\|G7K6A4\|G7K6A4_MEDTR	0	ATP-dependent zinc metalloprotease FTSH protein {ECO:0000313\|EMBL:AES98542.1}

Sequence

Transcript Sequence

>Glyur001100s00028608.1
CGGGTCACCTTGTCTCTTTTCTCTCTCTTGCAACCATTGGTACACTTGAGAAACGAAAAAGAAGATTATCTTCAAAGCTCACCTATATATATACGCAAACGCCTCGCGCATGCACGCGAACGCGAAGAAGATATTCAAAGTTTTGATTTTTTCTTCTGTGGGTCTTTCTCTTTATCCTCTTTTCAATTTCAATGTCGTCGTTGGATTATTATCTACCTCCCTTAACGCACACAAAAATCTACCTCCATTCATACTCCGCCAAATCCAATTTCCACCACCACTNGAGAAAACANAACGCGCGTCGTTTCGTTGTTCCCAATTCGGTTCCCGTTAGGGTTCTTAGGCACGCGAGCTTCCTAAGGGATTCTAGAAGGTTCGATTTGTGGGGAGGGTTGAAGCTGAACAACGATGGGGCGAGAAACGGTGGTGGTTGTGGAAGTGCGGCAACCGGCGGCCAGGAGAGCGATTCCGGCGAGAAGAGNGAGGAGGGGAAAGGGGTAGAACCGGGTTCGTCCGGTTCGAACCGGAGGAGGGAAAAGCAGCAAGGGAAGGGTGGGTGGTGGGGGTGGTTGTTGGGGAAGTGGAGGTGGCAACCAATAGTTCAGGCTCAGGAAGTTGGTGTTTTGCTTCTTCAATTGGGGATTGTGGTTTTCGTTATGCGGTTGCTTAGGCCCGGGATTCCCTTACCTGGCTCCGAACCAAGGGCTACNACGTCGTTTGTTAGCGTTCCGTACAGTGAGTTCCTTAGTAAGATCAATAGTGACCAGGTGCACAAGGTTGAGGTTGATGGGGTCCACATCATGTTCAAGTTGAAGTCTGACGTGGAGGGGGGTGATAATAGCGGTACTACTACTAGGTTGCAGGAGACAGAGTCGTCGTTGGTTAAGAGTGTTGCTCCAACAACAAAGAGGATTGTTTATACTACCACGAGGCCTAGTGATATAAGAACCCCTTATGTAAAGATGCTTGAGAATGAGGTTGAGTTTGGGTCCCCGGATAAGCGTTCTGGTGGATTCTTCAACTCTGCTCTGATAGCCCTGTTTTATGTTGCTGTACTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAGCATACTGCTGGTCAGATTAGGAACCGCAAATCAGGAATATCTGCTGGTACAAAATCATCTGAAAAAGGTGAAACAATCACTTTTGCTGATGTTGCTGGTGTTGACGAAGCAAAGGAGGAGCTAGAAGAGATTGTGGAATTTCTTCGAAACCCAGATAGATATGTACGACTTGGAGCTCGTCCTCCTCGAGGTGTTCTCTTGGTAGGTCTTCCGGGGACAGGTAAGACTTTANTAGCAAAGGCTGTGGCTGGGGAAGCGGATGTGCCATTTATAAGCTGTTCCGCTAGTGAGTTTGTAGAGTTGTATGTTGGTATGGGTGCTTCCCGTGTGAGAGATCTCTTTGCAAGGGCAAAGAAGGAAGCACCATCCATAATATTTATTGANGAGATAGATGCTGTGGCTAAAAGTCGTGATGGTAAATTTCGTATTGTAAGCAATGATGAACGAGAACAAACCCTGAACCAGTTGCTCACTGAGATGGATGGTTTTGACAGCAGTTCAGCAGTGATTGTTCTTGGGGCAACTAATCGTGCAGATGTCTTAGACCCTGCACTTCGTCGACCAGGAAGATTTGATCGAGTAGTTATGGTGGAAACACCTGATAGGATTGGAAGAGAATCCATCCTGAGAGTTCATGTTTCCAAGAAAGAACTTCCTTTGGCCAAGGATGTTCACCTTGGTGACATTGCTTCTATGACTACTGGTTTCACAGGAGCGGATCTTGCAAACCTAGTAAACGAGGCTGCTTTATTGGCCGGAAGACTGAACAAAGTTGTTGTGGAGAAAATTGATTTCATCCAAGCTGTGGAAAGATCAATAGCTGGCATAGAAAAGAAAACTGCCAAGTTGAAAGGAAATGAGAAGGCTGTAGTTGCACGACANGAAGCTGGTCATGCTGTAGTAGGCACTGCTGTTGCAAATCTTCTTCCTGGACAGCCACGTGTTGAGAAACTAAGCATATTGCCTAGGACAGGAGGGGCCTTGGGCTTTACATACATTCCTCCAACAAATGAGGACAGATACTTGCTTTTCATTGATGAGTTGCGTGGCCGCCTGGTGACCCTTCTTGGAGGACGTGCAGCAGAAGAAGTTGTTTATTCTGGTCGTGTGTCAACAGGTGCGCTTGACGACATACGACGAGCAACTGACATGGCATACAAAGCTATTGCTGAATATGGTCTTAATCAGACAATAGGCCCCGTGTCAATTGCCACTCTTTGTAATNGTGGAATTGACGAGTCTGGCGGATCAGTTCCTTGGGGAAGGGATCAGCATACTGCTGGTCAGATTAGGAACCGCAAATCAGGAATATCTGCTGGTACAAAATCATCTGAAAAAGGTGAAACAATCACTTTTGCTGATGTTGCTGGTGTTGACGAAGCAAAGGAGGAGCTAGAAGAGATTGTGGAATTTCTTCGAAACCCAGATAGATATGTACGACTTGGAGCTCGTCCTCCTCGAGGTGTTCTCTTGGTAGGTCTTCCGGGGACAGGTAAGACTTTACTAGCAAAGGCTGTGGCTGGGGAAGCGGATATAGATGCTGTGGCTAAAAGTCGTGATGGTAAATTTCGTATTGTAAGCAATGATGAACGAGAACAAACCCTGAACCAGTTGCTCACTGAGATGGATGGTTTTGACAGCAGTTCAGCAGTGATTGTTCTTGGGGCAACTAATCGTGCAGATGTCTTAGACCCTGCACTTCGTCGACCAGGAAGATTTGATCGAGTGGAAACACCTGATAGGATTGGAAGAGAATCCATCCTGAGAGTTCATGTTTCCAAGAAAGAACTTCCTTTGGCCAAGGATGTTCACCTTGGTGACATTGCTTCTATGACTACTGGTTTCACAGGAGCGGATCTTGCAAACCTAGTAAACGAGGCTGCTTTATTGGCCGGAAGACTGAACAAAGTTGTTGTGGAGAAAATTGATTTCATCCAAGCTGTGGAAAGATCAATAGCTGGCATAGAAAAGAAAACTGCCAAGTTGAAAGGAAATGAGAAGGCTGTAGTTGCACGACACGAAGCTGGTCATGCTGTAGTAGGCACTGCTGTTGCAAATCTTCTTCCTGGACAGCCACGTGTTGAGGGACAACTTGTTGATCTTGTTCAAAGAGAGGTGAAAGCATTACTGCAGTCCGCGATGGATGTATCACTTTCCATTGTGCGGGCTAATCCTACTGTTTTGGAGGGTCTTGGTGCTCATTTGGAAGAAAAAGAGAAAGTAGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTGGTTGCACCAACAGAGCTTGCAATTTTTATAGAAGGCAGGCAACAGCCACTTCTCCCATTGCAGACCGAAGTCTATAGATAG

Protein Sequence

>Glyur001100s00028608.1
MSSLDYYLPPLTHTKIYLHSYSAKSNFHHHXRKXNARRFVVPNSVPVRVLRHASFLRDSRRFDLWGGLKLNNDGARNGGGCGSAATGGQESDSGEKXEEGKGVEPGSSGSNRRREKQQGKGGWWGWLLGKWRWQPIVQAQEVGVLLLQLGIVVFVMRLLRPGIPLPGSEPRATTSFVSVPYSEFLSKINSDQVHKVEVDGVHIMFKLKSDVEGGDNSGTTTRLQETESSLVKSVAPTTKRIVYTTTRPSDIRTPYVKMLENEVEFGSPDKRSGGFFNSALIALFYVAVLAGLLHRFPVSFSQHTAGQIRNRKSGISAGTKSSEKGETITFADVAGVDEAKEELEEIVEFLRNPDRYVRLGARPPRGVLLVGLPGTGKTLXAKAVAGEADVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIXEIDAVAKSRDGKFRIVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVMVETPDRIGRESILRVHVSKKELPLAKDVHLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIQAVERSIAGIEKKTAKLKGNEKAVVARXEAGHAVVGTAVANLLPGQPRVEKLSILPRTGGALGFTYIPPTNEDRYLLFIDELRGRLVTLLGGRAAEEVVYSGRVSTGALDDIRRATDMAYKAIAEYGLNQTIGPVSIATLCNXGIDESGGSVPWGRDQHTAGQIRNRKSGISAGTKSSEKGETITFADVAGVDEAKEELEEIVEFLRNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGEADIDAVAKSRDGKFRIVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVETPDRIGRESILRVHVSKKELPLAKDVHLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIQAVERSIAGIEKKTAKLKGNEKAVVARHEAGHAVVGTAVANLLPGQPRVEGQLVDLVQREVKALLQSAMDVSLSIVRANPTVLEGLGAHLEEKEKVEGEELQKWLRLVVAPTELAIFIEGRQQPLLPLQTEVYR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01100	58163	81315	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0005524 ATP binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001100s00028608.1	PF06480.10	FtsH_ext	146	305	1.10E-06
Glyur001100s00028608.1	PF00004.24	AAA	367	500	1.20E-40
Glyur001100s00028608.1	PF01434.13	Peptidase_M41	566	706	2.30E-34
Glyur001100s00028608.1	PF00004.24	AAA	813	878	1.40E-13
Glyur001100s00028608.1	PF01434.13	Peptidase_M41	945	988	1.70E-08
Glyur001100s00028608.2	PF06480.10	FtsH_ext	146	338	4.80E-07
Glyur001100s00028608.2	PF00004.24	AAA	362	495	7.60E-41
Glyur001100s00028608.2	PF01434.13	Peptidase_M41	561	774	3.30E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.015
SRR1783600	control	2.033
SRR1783602	moderate drought stress	2.804
SRR1811619	moderate drought stress	2.765

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.913
DRR006520	Root Summer glycyrrhizin high producing strain	2.967
DRR006521	Root Winter glycyrrhizin high producing strain	3.876
DRR006522	Root Winter glycyrrhizin high producing strain	3.710
DRR006523	Root Summer glycyrrhizin low producing strain	3.948
DRR006524	Root Summer glycyrrhizin low producing strain	4.137
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.393
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.020

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.257
SRR2868004	Drought Stress (root)	13.834
SRR2967015	Control (root)	13.577

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.168
SRR9715740	Leaf	19.059
SRR9715741	Leaf	14.712
SRR9715739	Root	3.701
SRR9715742	Root	3.394
SRR9715743	Root	4.036

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.332
SRR8749028	MeJA induced 9h	14.079
SRR8749029	MeJA induced 9h	8.937
SRR8749030	Uninduced	10.697
SRR8749031	Uninduced	21.596
SRR8749032	Uninduced	17.648

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.181
SRR8400027	Control - Root	5.857