Gene detail information of Glyur001100s00028602.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47000.1 | 0 | Glycosyl hydrolase family protein |
| NR | KHN40052.1 | 0 | Lysosomal beta glucosidase [Glycine soja] |
| COG | YP_002508171.1 | 6.00E-143 | beta-N-acetylhexosaminidase [Halothermothrix orenii H 168] |
| Swissprot | tr|Q94KD8|BXL2_ARATH | 4.00E-21 | Probable beta-D-xylosidase 2 (Precursor) |
| trEMBL | tr|I1MB94|I1MB94_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G37070.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01100 | 35986 | 41454 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05349 | bglX | EC:3.2.1.21 | Starch and sucrose metabolism | map00500 |
| Cyanoamino acid metabolism | map00460 | |||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001100s00028602.1 | PF00933.16 | Glyco_hydro_3 | 27 | 188 | 6.00E-35 |
| Glyur001100s00028602.1 | PF00933.16 | Glyco_hydro_3 | 203 | 300 | 1.60E-24 |
| Glyur001100s00028602.1 | PF01915.17 | Glyco_hydro_3_C | 337 | 538 | 3.90E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.203 |
| SRR1783600 | control | 0.110 |
| SRR1783602 | moderate drought stress | 0.244 |
| SRR1811619 | moderate drought stress | 0.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.256 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.263 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.323 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.176 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.192 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.890 |
| SRR2868004 | Drought Stress (root) | 6.709 |
| SRR2967015 | Control (root) | 6.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.187 |
| SRR9715740 | Leaf | 0.254 |
| SRR9715741 | Leaf | 0.080 |
| SRR9715739 | Root | 0.433 |
| SRR9715742 | Root | 0.466 |
| SRR9715743 | Root | 0.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.223 |
| SRR8749028 | MeJA induced 9h | 0.040 |
| SRR8749029 | MeJA induced 9h | 0.074 |
| SRR8749030 | Uninduced | 0.201 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.261 |
| SRR8400027 | Control - Root | 3.055 |